chr4 : 81,032,276 – 81,032,998
722 bp 74 TFs 1 linked gene
This 722 bp open chromatin element is linked to BMP3 and is bound by 74 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
BMP3 1.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:81,027,276 – 81,037,998
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
74 transcription factors
Source
Cell type
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 652 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 312 bp overlap
BHLHE23 1 dataset
Motif DE_12h DE_12h-BHLHE23_MA0817.2 10 bp overlap
BRD4 2 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 115 bp overlap
ChIP OCI-Ly1_DMSO GSE53601.BRD4.OCI-Ly1_DMSO 722 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 377 bp overlap
CTCF 14 datasets
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 191 bp overlap
ChIP GM23338 ENCFF772DML 189 bp overlap
ChIP OCI-LY1 ENCFF455ESK 283 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 167 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 100 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 213 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 255 bp overlap
ChIP PC-3 ENCFF487TUI 352 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 297 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 371 bp overlap
ChIP SU-DHL-6 ENCSR125DKL.CTCF.SU-DHL-6 160 bp overlap
ChIP gastroesophageal-sphincter ENCSR146BGM.CTCF.gastroesophageal-sphincter 237 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 83 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 233 bp overlap
EBF3 1 dataset
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
ELF3 1 dataset
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 115 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 215 bp overlap
EZH2 6 datasets
ChIP LNCaP GSE39459.EZH2.LNCaP 382 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 409 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 337 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 227 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 148 bp overlap
ChIP keratinocyte ENCFF070STK 199 bp overlap
EZH2_phosphoT487 1 dataset
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 282 bp overlap
Ebf2 1 dataset
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
FOXA1 41 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 216 bp overlap
ChIP 22Rv1 GSE85558.FOXA1.22Rv1 113 bp overlap
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 147 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 268 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 222 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 368 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 215 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 263 bp overlap
ChIP LNCaP GSE52725.FOXA1.LNCaP 69 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 85 bp overlap
ChIP LNCaP_DHT GSE28264.FOXA1.LNCaP_DHT 142 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 187 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 83 bp overlap
ChIP MCF-7 GSE95302.FOXA1.MCF-7 139 bp overlap
ChIP MCF-7 GSE59530.FOXA1.MCF-7 78 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 102 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 84 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 115 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 191 bp overlap
ChIP MCF-7_E2 GSE59530.FOXA1.MCF-7_E2 61 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 133 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 116 bp overlap
ChIP MCF-7_E2 GSE59530.FOXA1.MCF-7_E2 67 bp overlap
ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 80 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 100 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 106 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 51 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 147 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 170 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 141 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 481 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 72 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 435 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 384 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 113 bp overlap
ChIP T47D-A1-2_Dex GSE112491.FOXA1.T47D-A1-2_Dex 131 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 166 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 144 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 201 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 178 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 204 bp overlap
FOXA2 10 datasets
ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 155 bp overlap
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 247 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 267 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 158 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 212 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 255 bp overlap
ChIP DE DE-FOXA2-1 315 bp overlap
ChIP DE DE-FOXA2-2 322 bp overlap
ChIP PC-3_Veh GSE148982.FOXA2.PC-3_Veh 77 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 134 bp overlap
FOXD2 1 dataset
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
FOXL2 1 dataset
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 82 bp overlap
FOXP1 2 datasets
ChIP SU-DHL-6 ERP010999.FOXP1.SU-DHL-6 177 bp overlap
ChIP SU-DHL-6 ERP010999.FOXP1.SU-DHL-6 115 bp overlap
FOXP2 1 dataset
ChIP PFSK1 ENCSR000BGA.FOXP2.PFSK1 91 bp overlap
GATA6 4 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 287 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 62 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 352 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 171 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 81 bp overlap
KLF4 2 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 131 bp overlap
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 112 bp overlap
KLF8 1 dataset
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 381 bp overlap
MED1 3 datasets
ChIP OCI-Ly1 GSE53601.MED1.OCI-Ly1 171 bp overlap
ChIP OCI-Ly1 GSE53601.MED1.OCI-Ly1 208 bp overlap
ChIP OCI-Ly1 GSE53601.MED1.OCI-Ly1 78 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 74 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 443 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 199 bp overlap
NR1H2 1 dataset
ChIP HT29_GW3965_48H GSE77039.NR1H2.HT29_GW3965_48H 72 bp overlap
OLIG1 1 dataset
Motif DE_12h DE_12h-OLIG1_MA0826.1 10 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 108 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 64 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 66 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 667 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 522 bp overlap
POLR2A 8 datasets
ChIP Peyer's patch ENCFF767HVN 314 bp overlap
ChIP Peyer's patch ENCFF767HVN 102 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 297 bp overlap
ChIP sigmoid colon ENCFF101ILL 182 bp overlap
ChIP sigmoid colon ENCFF725QFT 203 bp overlap
ChIP sigmoid colon ENCFF748YVT 130 bp overlap
ChIP sigmoid colon ENCFF754JQR 215 bp overlap
ChIP transverse colon ENCFF610RWV 227 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 426 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 270 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 187 bp overlap
REL 1 dataset
ChIP Ramos GSE139810.REL.Ramos 540 bp overlap
REST 1 dataset
ChIP WA01 ENCSR000BHM.REST.WA01 107 bp overlap
RNF2 3 datasets
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 541 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 250 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 162 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 276 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 276 bp overlap
SMAD3 4 datasets
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 94 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 86 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 108 bp overlap
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 75 bp overlap
SMAD3-HIF1A 1 dataset
ChIP PC-3_hypoxia GSE106305.SMAD3-HIF1A.PC-3_hypoxia 77 bp overlap
SMARCA4 3 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 132 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 239 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 183 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 195 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 148 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
STAG1 1 dataset
ChIP MCF-7 ERP000209.STAG1.MCF-7 159 bp overlap
SUZ12 2 datasets
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 189 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 324 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 197 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 167 bp overlap
TFAP4 1 dataset
ChIP DLD-1 GSE46935.TFAP4.DLD-1 203 bp overlap
WT1 3 datasets
ChIP HEK293 ENCFF906HIR 249 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 327 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 98 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 147 bp overlap
ZBTB44 1 dataset
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 59 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 111 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 268 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 124 bp overlap
ZNF24 1 dataset
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 237 bp overlap
ZNF263 2 datasets
ChIP HEK293 ENCFF336CWQ 335 bp overlap
ChIP HEK293 ENCFF336CWQ 559 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 78 bp overlap
ZNF341 5 datasets
ChIP HEK293 ENCFF944VMC 287 bp overlap
ChIP HEK293 ENCFF944VMC 517 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 335 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 228 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 66 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 58 bp overlap
ZNF362 1 dataset
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 71 bp overlap
ZNF394 1 dataset
ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 66 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 148 bp overlap
ZNF766 1 dataset
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
ZNF778 1 dataset
ChIP HEK293T GSE78099.ZNF778.HEK293T 112 bp overlap
ZSCAN21 1 dataset
ChIP HEK293 ENCSR253CKN.ZSCAN21.HEK293 74 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 81 bp overlap
ZSCAN5C 3 datasets
ChIP HEK293 ENCFF343DTU 357 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 301 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 69 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 54 bp overlap
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