chr4 : 66,014,197 – 66,014,829
632 bp 81 TFs 0 linked genes
This 632 bp open chromatin element has no linked target genes and is bound by 81 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:66,009,197 – 66,019,829
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
81 transcription factors
Source
Cell type
ASCL1 3 datasets
Motif DE_72h DE_72h-ASCL1_MA1631.2 9 bp overlap
Motif ES_0h ES_0h-ASCL1_MA1100.3 8 bp overlap
Motif ES_0h ES_0h-ASCL1_MA1631.2 9 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 603 bp overlap
ChIP H1 ENCFF399KAM 399 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 550 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 214 bp overlap
Ascl2 1 dataset
Motif ES_0h ES_0h-Ascl2_MA0816.1 10 bp overlap
BCL11A 2 datasets
Motif DE_60h DE_60h-BCL11A_MA2324.1 7 bp overlap
Motif ES_0h ES_0h-BCL11A_MA2324.1 7 bp overlap
BCL6B 3 datasets
Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap
Motif DE_60h DE_60h-BCL6B_MA0731.1 17 bp overlap
Motif ES_0h ES_0h-BCL6B_MA0731.1 17 bp overlap
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif ES_0h ES_0h-BHLHE22_MA1635.2 6 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 121 bp overlap
CTBP2 1 dataset
ChIP H1 ENCFF329MAX 528 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 250 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 157 bp overlap
ERF::NHLH1 1 dataset
Motif ES_0h ES_0h-ERFNHLH1_MA1938.2 16 bp overlap
FERD3L 2 datasets
Motif DE_72h DE_72h-FERD3L_MA1485.1 14 bp overlap
Motif ES_0h ES_0h-FERD3L_MA1485.1 14 bp overlap
FIGLA 1 dataset
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
GATA6 2 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 66 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 310 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 283 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 135 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 283 bp overlap
IFNA1 1 dataset
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 177 bp overlap
ISL1 1 dataset
ChIP Huh-7 GSE77957.ISL1.Huh-7 269 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 568 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 233 bp overlap
MAZ 2 datasets
ChIP Hep-G2 ENCSR000EDN.MAZ.Hep-G2 187 bp overlap
ChIP HepG2 ENCFF867JNL 377 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 215 bp overlap
MYB 1 dataset
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
MYOD1 4 datasets
Motif DE_72h DE_72h-MYOD1_MA0499.3 9 bp overlap
Motif ES_0h ES_0h-MYOD1_MA0499.3 9 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 193 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 113 bp overlap
NANOG 4 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 360 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 204 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 134 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 103 bp overlap
NHLH1 1 dataset
Motif ES_0h ES_0h-NHLH1_MA0048.3 9 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif ES_0h ES_0h-Neurod2_MA1993.2 6 bp overlap
OSR1 1 dataset
Motif ES_0h ES_0h-OSR1_MA1542.2 8 bp overlap
OSR2 1 dataset
Motif ES_0h ES_0h-OSR2_MA1646.2 8 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
Olig2 2 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 166 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 182 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 248 bp overlap
PRRX2 1 dataset
ChIP WTC11 ENCFF107JGJ 301 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 241 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 505 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 341 bp overlap
REST 1 dataset
Motif ES_0h ES_0h-REST_MA0138.3 20 bp overlap
SCRT1 2 datasets
Motif DE_72h DE_72h-SCRT1_MA0743.3 10 bp overlap
Motif ES_0h ES_0h-SCRT1_MA0743.3 10 bp overlap
SCRT2 2 datasets
Motif DE_72h DE_72h-SCRT2_MA0744.3 10 bp overlap
Motif ES_0h ES_0h-SCRT2_MA0744.3 10 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 584 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 470 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 353 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 547 bp overlap
SMARCC1 2 datasets
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 162 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 178 bp overlap
SNAI1 2 datasets
Motif DE_72h DE_72h-SNAI1_MA1558.2 7 bp overlap
Motif ES_0h ES_0h-SNAI1_MA1558.2 7 bp overlap
SNAI2 2 datasets
Motif ES_0h ES_0h-SNAI2_MA0745.3 8 bp overlap
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 165 bp overlap
SNAI3 1 dataset
Motif ES_0h ES_0h-SNAI3_MA1559.2 9 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 311 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 295 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 192 bp overlap
SP5 3 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 117 bp overlap
TAL1 2 datasets
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 103 bp overlap
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 143 bp overlap
TCF12 4 datasets
Motif DE_72h DE_72h-TCF12_MA1648.2 7 bp overlap
Motif ES_0h ES_0h-TCF12_MA1648.2 7 bp overlap
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 213 bp overlap
TCF3 2 datasets
Motif DE_72h DE_72h-TCF3_MA0522.4 7 bp overlap
Motif ES_0h ES_0h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif ES_0h ES_0h-TCF4_MA0830.3 8 bp overlap
TEAD1 4 datasets
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap
ChIP HepG2 ENCFF661PNM 237 bp overlap
ChIP WTC11 ENCFF502QUV 405 bp overlap
TEAD3 1 dataset
ChIP HepG2 ENCFF054UUL 177 bp overlap
TEAD4 13 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 632 bp overlap
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 227 bp overlap
ChIP Hep-G2 ENCSR000BRP.TEAD4.Hep-G2 221 bp overlap
ChIP HepG2 ENCFF006QNB 431 bp overlap
ChIP HepG2 ENCFF250NXO 211 bp overlap
ChIP Ishikawa ENCFF772OTG 301 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 148 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 262 bp overlap
ChIP WTC11 ENCFF114TZS 341 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 272 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 343 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 231 bp overlap
Tcf12 2 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
Vdr 2 datasets
Motif DE_72h DE_72h-Vdr_MA0693.4 7 bp overlap
Motif ES_0h ES_0h-Vdr_MA0693.4 7 bp overlap
YY1 1 dataset
ChIP H1 ENCFF524BTL 337 bp overlap
ZEB1 1 dataset
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZKSCAN1 3 datasets
Motif DE_12h DE_12h-ZKSCAN1_MA1585.2 9 bp overlap
Motif DE_60h DE_60h-ZKSCAN1_MA1585.2 9 bp overlap
Motif ES_0h ES_0h-ZKSCAN1_MA1585.2 9 bp overlap
ZNF148 3 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif DE_60h DE_60h-ZNF148_MA1653.2 10 bp overlap
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF217 1 dataset
ChIP Hep-G2 ENCSR055FQB.ZNF217.Hep-G2 160 bp overlap
ZNF276 1 dataset
ChIP Hep-G2 ENCSR076KLJ.ZNF276.Hep-G2 156 bp overlap
ZNF281 3 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 323 bp overlap
ZNF547 2 datasets
Motif DE_72h DE_72h-ZNF547_MA2334.1 13 bp overlap
Motif ES_0h ES_0h-ZNF547_MA2334.1 13 bp overlap
ZNF549 3 datasets
Motif DE_72h DE_72h-ZNF549_MA1728.2 8 bp overlap
Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap
Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap
ZNF684 3 datasets
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
Motif DE_60h DE_60h-ZNF684_MA1600.2 14 bp overlap
Motif ES_0h ES_0h-ZNF684_MA1600.2 14 bp overlap
ZNF707 2 datasets
Motif ES_0h ES_0h-ZNF707_MA1715.1 15 bp overlap
Motif ES_0h ES_0h-ZNF707_MA1715.1 15 bp overlap
ZNF85 2 datasets
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
Motif ES_0h ES_0h-ZNF85_MA1720.2 12 bp overlap
ZNF93 2 datasets
Motif DE_72h DE_72h-ZNF93_MA1721.2 14 bp overlap
Motif ES_0h ES_0h-ZNF93_MA1721.2 14 bp overlap
Zfp335 2 datasets
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap
Zic1::Zic2 2 datasets
Motif DE_72h DE_72h-Zic1Zic2_MA1628.2 7 bp overlap
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_72h DE_72h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_72h DE_72h-Zic3_MA0697.3 7 bp overlap
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap
Huangfu Lab · Publications · Resources · Contact