chr4 : 38,654,313 38,654,733
420 bp 103 TFs 2 linked genes
This 420 bp open chromatin element is linked to KLF3 and KLF3-AS1 and is bound by 103 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
KLF3 9.5 kb Proximal Proximity
KLF3-AS1 9.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:38,649,313 – 38,659,733
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
103 transcription factors
Source
Cell type
BCL11B 1 dataset
ChIP PBMC_T-reg GSE120872.BCL11B.PBMC_T-reg 192 bp overlap
BRD4 5 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 366 bp overlap
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 313 bp overlap
ChIP K-562_dilution-6-100 GSE140325.BRD4.K-562_dilution-6-100 168 bp overlap
ChIP T-cell_DMSO GSE138084.BRD4.T-cell_DMSO 262 bp overlap
ChIP T-cell_iBET GSE138084.BRD4.T-cell_iBET 209 bp overlap
CD74 1 dataset
ChIP CLL_p4 GSE88955.CD74.CLL_p4 256 bp overlap
CDK9 1 dataset
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 167 bp overlap
E2F6 1 dataset
ChIP K-562 ENCSR000EWJ.E2F6.K-562 148 bp overlap
EOMES 2 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap
EP300 1 dataset
ChIP Kasumi-1 GSE115115.EP300.Kasumi-1 134 bp overlap
ETS1 1 dataset
ChIP CD4-pos GSE146787.ETS1.CD4-pos 352 bp overlap
EVI1 1 dataset
ChIP SKH1_10d GSE87283.EVI1.SKH1_10d 298 bp overlap
EZH2 1 dataset
ChIP SU-DHL-6 GSE45982.EZH2.SU-DHL-6 164 bp overlap
FOXO1::ELK1 2 datasets
Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap
Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap
GATA2 2 datasets
ChIP SKH1 GSE87283.GATA2.SKH1 258 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 237 bp overlap
GRHL2 1 dataset
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HDAC1 1 dataset
ChIP K-562_dilution-6-100 GSE140325.HDAC1.K-562_dilution-6-100 72 bp overlap
HDAC2 1 dataset
ChIP K-562 GSE140325.HDAC2.K-562 92 bp overlap
HMBOX1 2 datasets
Motif DE_12h DE_12h-HMBOX1_MA0895.2 7 bp overlap
Motif DE_36h DE_36h-HMBOX1_MA0895.2 7 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
INSM1 1 dataset
Motif DE_36h DE_36h-INSM1_MA0155.1 12 bp overlap
KLF1 4 datasets
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
Motif DE_36h DE_36h-KLF1_MA0493.3 8 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 271 bp overlap
ChIP HEK293 GSE76494.KLF1.HEK293 200 bp overlap
KLF17 2 datasets
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 154 bp overlap
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 139 bp overlap
KLF2 2 datasets
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
Motif DE_36h DE_36h-KLF2_MA1515.2 8 bp overlap
KLF4 3 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
Motif DE_36h DE_36h-KLF4_MA0039.5 8 bp overlap
ChIP HAP1 GSE130417.KLF4.HAP1 151 bp overlap
KLF5 2 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif DE_36h DE_36h-KLF5_MA0599.1 10 bp overlap
KMT2A 1 dataset
ChIP blood_cord GSE83671.KMT2A.blood_cord 376 bp overlap
MAF 2 datasets
Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap
Motif DE_36h DE_36h-MAF_MA1520.2 13 bp overlap
MAFA 2 datasets
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
Motif DE_36h DE_36h-MAFA_MA1521.2 13 bp overlap
MAFK 1 dataset
ChIP HepG2 ENCFF743ZOF 213 bp overlap
MAZ 2 datasets
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
Motif DE_36h DE_36h-MAZ_MA1522.2 8 bp overlap
MECOM 2 datasets
ChIP SKH1_CEBPA-ER_E2 GSE102697.MECOM.SKH1_CEBPA-ER_E2 392 bp overlap
ChIP SKH1_E2 GSE102697.MECOM.SKH1_E2 255 bp overlap
Mafg 2 datasets
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
Motif DE_36h DE_36h-Mafg_MA0659.4 12 bp overlap
NR2C1 1 dataset
Motif DE_36h DE_36h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_36h DE_36h-NR2C2_MA1536.2 6 bp overlap
NR3C1 1 dataset
ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 286 bp overlap
Nr1H2 1 dataset
Motif DE_36h DE_36h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_36h DE_36h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_36h DE_36h-Nr1h3_MA2337.1 6 bp overlap
PATZ1 2 datasets
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
Motif DE_36h DE_36h-PATZ1_MA1961.2 11 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 183 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 154 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 379 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 176 bp overlap
RFX1 4 datasets
ChIP K-562 ENCSR968GIB.RFX1.K-562 376 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 244 bp overlap
ChIP K562 ENCFF421AVO 413 bp overlap
ChIP K562 ENCFF809XVG 401 bp overlap
RFX5 2 datasets
Motif DE_12h DE_12h-RFX5_MA0510.3 14 bp overlap
Motif DE_36h DE_36h-RFX5_MA0510.3 14 bp overlap
RREB1 1 dataset
Motif DE_36h DE_36h-RREB1_MA0073.2 19 bp overlap
RUNX1 5 datasets
ChIP AML GSE111821.RUNX1.AML 279 bp overlap
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 257 bp overlap
ChIP SKH1 GSE87283.RUNX1.SKH1 347 bp overlap
ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 204 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 237 bp overlap
SMAD2 2 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
Motif DE_36h DE_36h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 405 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 371 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 291 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 325 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 373 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 259 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 241 bp overlap
SOX12 2 datasets
Motif DE_12h DE_12h-SOX12_MA1561.2 10 bp overlap
Motif DE_36h DE_36h-SOX12_MA1561.2 10 bp overlap
SOX14 2 datasets
Motif DE_12h DE_12h-SOX14_MA1562.2 9 bp overlap
Motif DE_36h DE_36h-SOX14_MA1562.2 9 bp overlap
SOX18 2 datasets
Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap
Motif DE_36h DE_36h-SOX18_MA1563.2 8 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 303 bp overlap
SOX21 2 datasets
Motif DE_12h DE_12h-SOX21_MA0866.1 15 bp overlap
Motif DE_36h DE_36h-SOX21_MA0866.1 15 bp overlap
SOX8 2 datasets
Motif DE_12h DE_12h-SOX8_MA0868.3 7 bp overlap
Motif DE_36h DE_36h-SOX8_MA0868.3 7 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
SPDEF 1 dataset
Motif DE_12h DE_12h-SPDEF_MA0686.2 10 bp overlap
SPI1 4 datasets
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 201 bp overlap
ChIP primary-B-cell_donorA GSE128834.SPI1.primary-B-cell_donorA 195 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 232 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 84 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
STAT5A 1 dataset
ChIP MV4-11 GSE64862.STAT5A.MV4-11 142 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Stat5b 2 datasets
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
Motif DE_36h DE_36h-Stat5b_MA1625.2 9 bp overlap
TBR1 2 datasets
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
TBX18 2 datasets
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
Motif DE_36h DE_36h-TBX18_MA1565.2 9 bp overlap
TBX2 2 datasets
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
TBX20 2 datasets
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
Motif DE_36h DE_36h-TBX20_MA0689.1 11 bp overlap
TBX21 4 datasets
ChIP CD4_Th1 GSE62482.TBX21.CD4_Th1 160 bp overlap
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
Motif DE_36h DE_36h-TBX21_MA0690.3 10 bp overlap
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 211 bp overlap
TBX3 2 datasets
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 370 bp overlap
Tbx6 2 datasets
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
ZBTB7A 4 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 130 bp overlap
ChIP Hep-G2 ENCSR000BQA.ZBTB7A.Hep-G2 101 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 371 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 91 bp overlap
ZIC1 2 datasets
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
ZIC4 2 datasets
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
Motif DE_36h DE_36h-ZIC4_MA0751.2 14 bp overlap
ZIC5 2 datasets
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
ZKSCAN5 2 datasets
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_36h DE_36h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF148 2 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif DE_36h DE_36h-ZNF148_MA1653.2 10 bp overlap
ZNF182 1 dataset
ChIP HEK293T GSE78099.ZNF182.HEK293T 98 bp overlap
ZNF189 1 dataset
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
ZNF214 2 datasets
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
Motif DE_36h DE_36h-ZNF214_MA1975.2 13 bp overlap
ZNF257 2 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif DE_36h DE_36h-ZNF257_MA1710.2 10 bp overlap
ZNF416 2 datasets
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
Motif DE_36h DE_36h-ZNF416_MA1979.2 10 bp overlap
ZNF418 2 datasets
Motif DE_36h DE_36h-ZNF418_MA1980.1 15 bp overlap
Motif DE_36h DE_36h-ZNF418_MA1980.1 15 bp overlap
ZNF558 2 datasets
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
Motif DE_36h DE_36h-ZNF558_MA2335.1 29 bp overlap
ZNF677 2 datasets
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
Motif DE_36h DE_36h-ZNF677_MA2101.1 12 bp overlap
ZNF701 2 datasets
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
ZSCAN31 1 dataset
Motif DE_36h DE_36h-ZSCAN31_MA1722.2 18 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap