chr3 : 169,659,140 169,659,422
282 bp 83 TFs 1 linked gene
This 282 bp open chromatin element is linked to MECOM and is bound by 83 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
MECOM 4.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:169,654,140 – 169,664,422
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
83 transcription factors
Source
Cell type
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 75 bp overlap
ChIP H1 ENCFF399KAM 274 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 282 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 282 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 170 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 280 bp overlap
BMI1 2 datasets
ChIP GM12878 ENCSR469WII.BMI1.GM12878 282 bp overlap
ChIP K-562 ENCSR782WRO.BMI1.K-562 282 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 184 bp overlap
BRD2 2 datasets
ChIP MDA-MB-231_DMSO GSE116879.BRD2.MDA-MB-231_DMSO 236 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD2.MDA-MB-231_DMSO_rDNA 237 bp overlap
BRD4 3 datasets
ChIP HUVEC-C GSE53998.BRD4.HUVEC-C 192 bp overlap
ChIP HUVEC-C_modETS1 GSE93030.BRD4.HUVEC-C_modETS1 282 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 185 bp overlap
CBX7 1 dataset
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 245 bp overlap
CDKN1B 2 datasets
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 136 bp overlap
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 173 bp overlap
CHD1 2 datasets
ChIP H1 ENCFF998XEK 141 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 282 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 282 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 196 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 115 bp overlap
ESR1 4 datasets
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 195 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 275 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 67 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 121 bp overlap
ETS1 2 datasets
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 195 bp overlap
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 170 bp overlap
EZH2 11 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 282 bp overlap
ChIP GM23248 ENCFF506FWX 51 bp overlap
ChIP OCI-LY7 ENCFF434OYG 138 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 279 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 216 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 282 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 229 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 175 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 215 bp overlap
ChIP keratinocyte ENCFF070STK 133 bp overlap
ChIP keratinocyte ENCFF070STK 282 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 183 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 105 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 186 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCFF518OXG 282 bp overlap
IRF1 1 dataset
ChIP K-562_EPZ GSE129380.IRF1.K-562_EPZ 96 bp overlap
JARID2 1 dataset
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 159 bp overlap
JUN 4 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 66 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 102 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 63 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 262 bp overlap
KDM4A 1 dataset
ChIP H1 ENCFF078LED 112 bp overlap
KLF10 1 dataset
ChIP HEK293 ENCFF326EGX 126 bp overlap
KLF9 1 dataset
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
KMT2A 3 datasets
ChIP HEK293T_C-term GSE90762.KMT2A.HEK293T_C-term 282 bp overlap
ChIP HEK293T_C-term_shCtrl GSE90762.KMT2A.HEK293T_C-term_shCtrl 282 bp overlap
ChIP MCF-7_C-term_TTP22 GSE90762.KMT2A.MCF-7_C-term_TTP22 208 bp overlap
MBD3 1 dataset
ChIP MCF-7 GSE44737.MBD3.MCF-7 113 bp overlap
MED1 2 datasets
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 134 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 71 bp overlap
MSANTD3 2 datasets
Motif DE_12h DE_12h-MSANTD3_MA1523.2 7 bp overlap
Motif DE_12h DE_12h-MSANTD3_MA1523.2 7 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 282 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 169 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 158 bp overlap
NR4A1 1 dataset
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney GSE133122.NUTM1.embryonic-kidney 282 bp overlap
Nr2e1 1 dataset
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 282 bp overlap
PCGF2 1 dataset
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 282 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 127 bp overlap
POLR2A 1 dataset
ChIP body of pancreas ENCFF501FEC 282 bp overlap
POU5F1 5 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 147 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 282 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 282 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 83 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 139 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 264 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 178 bp overlap
RAD21 3 datasets
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 112 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 53 bp overlap
ChIP HUVEC-C_normoxia GSE94872.RAD21.HUVEC-C_normoxia 193 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 135 bp overlap
RING1 1 dataset
ChIP SYO-1_shCt GSE139053.RING1.SYO-1_shCt 282 bp overlap
RNF2 3 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 260 bp overlap
ChIP K-562 ENCSR138FUZ.RNF2.K-562 147 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 282 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 202 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 85 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 282 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 171 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 197 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 128 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 142 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 127 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 96 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 231 bp overlap
SMARCA4 5 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 275 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 262 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 225 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 172 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 221 bp overlap
SMARCC1 2 datasets
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 282 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 204 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 184 bp overlap
SS18 2 datasets
ChIP SYO-1 GSE108025.SS18.SYO-1 261 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 282 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 161 bp overlap
SUZ12 2 datasets
ChIP K-562 ENCSR000AUC.SUZ12.K-562 183 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 205 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 163 bp overlap
TCF7L2 1 dataset
ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 128 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 137 bp overlap
TP63 1 dataset
ChIP SUIT-2 GSE115461.TP63.SUIT-2 133 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 278 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 206 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 282 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 230 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 209 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 282 bp overlap
ZFP37 1 dataset
ChIP HEK293 ENCSR365GRX.ZFP37.HEK293 282 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 201 bp overlap
ZKSCAN3 1 dataset
Motif DE_12h DE_12h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF18 2 datasets
ChIP HEK293 ENCFF066NGR 276 bp overlap
ChIP HEK293 GSE76494.ZNF18.HEK293 246 bp overlap
ZNF2 2 datasets
ChIP HEK293 ENCFF641ICT 282 bp overlap
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 282 bp overlap
ZNF22 1 dataset
ChIP HEK293 GSE76494.ZNF22.HEK293 260 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 123 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 282 bp overlap
ZNF362 2 datasets
ChIP HEK293 ENCFF436CGE 176 bp overlap
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 282 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 156 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 282 bp overlap
ZSCAN4 2 datasets
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 216 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 282 bp overlap