chr3 : 120,521,415 120,521,731
316 bp 164 TFs 0 linked genes
This 316 bp open chromatin element has no linked target genes and is bound by 164 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:120,516,415 – 120,526,731
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
164 transcription factors
Source
Cell type
ALX3 1 dataset
Motif DE_48h DE_48h-ALX3_MA0634.2 6 bp overlap
ARGFX 1 dataset
Motif DE_48h DE_48h-ARGFX_MA1463.2 8 bp overlap
ATOH7 1 dataset
Motif DE_12h DE_12h-ATOH7_MA1468.1 10 bp overlap
Arx 1 dataset
Motif DE_48h DE_48h-Arx_MA0874.2 10 bp overlap
Atoh1 1 dataset
Motif DE_12h DE_12h-Atoh1_MA0461.3 8 bp overlap
BARX1 2 datasets
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap
BHLHA15 1 dataset
Motif DE_12h DE_12h-BHLHA15_MA0607.2 10 bp overlap
BHLHE22 1 dataset
Motif DE_12h DE_12h-BHLHE22_MA0818.2 10 bp overlap
BHLHE23 1 dataset
Motif DE_12h DE_12h-BHLHE23_MA0817.2 10 bp overlap
BSX 2 datasets
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 99 bp overlap
DLX1 2 datasets
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap
DLX6 2 datasets
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap
DRGX 1 dataset
Motif DE_48h DE_48h-DRGX_MA1481.2 6 bp overlap
Dlx2 2 datasets
Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap
Motif DE_48h DE_48h-Dlx2_MA0885.3 8 bp overlap
Dlx3 2 datasets
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap
Dlx4 2 datasets
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap
Dlx5 2 datasets
Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap
Motif DE_48h DE_48h-Dlx5_MA1476.3 8 bp overlap
E2F6 1 dataset
Motif DE_48h DE_48h-E2F6_MA0471.3 8 bp overlap
EBF1 1 dataset
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
EBF3 1 dataset
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
EMX1 1 dataset
Motif DE_48h DE_48h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif DE_48h DE_48h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif DE_48h DE_48h-EN1_MA0027.3 6 bp overlap
EN2 1 dataset
Motif DE_48h DE_48h-EN2_MA0642.3 7 bp overlap
EOMES 3 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 258 bp overlap
ESX1 1 dataset
Motif DE_48h DE_48h-ESX1_MA0644.3 7 bp overlap
ETV5::HOXA2 2 datasets
Motif DE_12h DE_12h-ETV5HOXA2_MA1948.2 12 bp overlap
Motif DE_48h DE_48h-ETV5HOXA2_MA1948.2 12 bp overlap
ETV6 2 datasets
Motif DE_12h DE_12h-ETV6_MA0645.2 9 bp overlap
Motif DE_48h DE_48h-ETV6_MA0645.2 9 bp overlap
ETV7 2 datasets
Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap
Motif DE_48h DE_48h-ETV7_MA1708.2 9 bp overlap
EVX1 1 dataset
Motif DE_48h DE_48h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif DE_48h DE_48h-EVX2_MA0888.2 6 bp overlap
Ebf2 1 dataset
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
Ebf4 1 dataset
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
FIGLA 3 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 264 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 280 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-2 313 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 282 bp overlap
GBX1 1 dataset
Motif DE_48h DE_48h-GBX1_MA0889.2 7 bp overlap
GBX2 2 datasets
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap
GSX1 1 dataset
Motif DE_48h DE_48h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif DE_48h DE_48h-GSX2_MA0893.3 7 bp overlap
HESX1 2 datasets
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap
HOXA1 1 dataset
Motif DE_48h DE_48h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif DE_48h DE_48h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif DE_48h DE_48h-HOXA3_MA2119.1 7 bp overlap
HOXA6 2 datasets
Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap
Motif DE_48h DE_48h-HOXA6_MA1497.2 7 bp overlap
HOXA7 2 datasets
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap
HOXB1 1 dataset
Motif DE_48h DE_48h-HOXB1_MA2093.1 7 bp overlap
HOXB2 1 dataset
Motif DE_48h DE_48h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif DE_48h DE_48h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif DE_48h DE_48h-HOXB5_MA0904.3 6 bp overlap
HOXB6 2 datasets
Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap
Motif DE_48h DE_48h-HOXB6_MA1500.2 7 bp overlap
HOXB7 2 datasets
Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap
Motif DE_48h DE_48h-HOXB7_MA1501.2 7 bp overlap
HOXB8 2 datasets
Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap
Motif DE_48h DE_48h-HOXB8_MA1502.2 7 bp overlap
HOXC8 1 dataset
Motif DE_48h DE_48h-HOXC8_MA1505.2 6 bp overlap
HOXD3 1 dataset
Motif DE_48h DE_48h-HOXD3_MA0912.2 8 bp overlap
HOXD8 2 datasets
Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap
Motif DE_48h DE_48h-HOXD8_MA0910.3 7 bp overlap
HOXD9 2 datasets
Motif DE_12h DE_12h-HOXD9_MA0913.3 9 bp overlap
Motif DE_48h DE_48h-HOXD9_MA0913.3 9 bp overlap
Hmx1 2 datasets
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
Motif DE_48h DE_48h-Hmx1_MA0896.2 9 bp overlap
Hmx2 2 datasets
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Motif DE_48h DE_48h-Hmx2_MA0897.2 15 bp overlap
Hmx3 2 datasets
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
Motif DE_48h DE_48h-Hmx3_MA0898.2 9 bp overlap
Hoxd13 1 dataset
Motif DE_48h DE_48h-Hoxd13_MA0909.4 7 bp overlap
ISX 1 dataset
Motif DE_48h DE_48h-ISX_MA0654.2 6 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 316 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 248 bp overlap
LBX1 1 dataset
Motif DE_48h DE_48h-LBX1_MA0618.2 7 bp overlap
LBX2 2 datasets
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap
LHX2 2 datasets
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap
LHX5 1 dataset
Motif DE_48h DE_48h-LHX5_MA1519.2 7 bp overlap
LHX6 1 dataset
Motif DE_48h DE_48h-LHX6_MA0658.2 8 bp overlap
LHX9 1 dataset
Motif DE_48h DE_48h-LHX9_MA0701.3 7 bp overlap
LMX1A 1 dataset
Motif DE_48h DE_48h-LMX1A_MA0702.3 7 bp overlap
LMX1B 1 dataset
Motif DE_48h DE_48h-LMX1B_MA0703.3 8 bp overlap
Lhx4 1 dataset
Motif DE_48h DE_48h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif DE_48h DE_48h-Lhx8_MA0705.2 6 bp overlap
MAFF 1 dataset
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MEOX1 1 dataset
Motif DE_48h DE_48h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif DE_48h DE_48h-MEOX2_MA0706.2 7 bp overlap
MGA 2 datasets
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap
MGA::EVX1 3 datasets
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap
MIXL1 1 dataset
Motif DE_48h DE_48h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif DE_48h DE_48h-MNX1_MA0707.3 6 bp overlap
MSX1 2 datasets
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap
MSX2 2 datasets
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap
MYOD1 1 dataset
Motif DE_48h DE_48h-MYOD1_MA0499.3 9 bp overlap
Msgn1 1 dataset
Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap
Msx3 2 datasets
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap
NANOG 3 datasets
ChIP WA01 ERP004238.NANOG.WA01 191 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 277 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 230 bp overlap
NEUROG1 1 dataset
Motif DE_12h DE_12h-NEUROG1_MA0623.2 10 bp overlap
NEUROG2 1 dataset
Motif DE_12h DE_12h-NEUROG2_MA0669.1 10 bp overlap
NFATC3 2 datasets
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Motif DE_48h DE_48h-NFATC3_MA0625.3 6 bp overlap
NFIA 1 dataset
Motif DE_48h DE_48h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif DE_48h DE_48h-NFIC_MA0161.3 7 bp overlap
NFIX 1 dataset
Motif DE_48h DE_48h-NFIX_MA0671.2 6 bp overlap
NKX6-2 1 dataset
Motif DE_48h DE_48h-NKX6-2_MA0675.2 6 bp overlap
NOTO 1 dataset
Motif DE_48h DE_48h-NOTO_MA0710.2 7 bp overlap
Nfatc1 2 datasets
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_48h DE_48h-Nfatc1_MA0624.3 6 bp overlap
Nobox 2 datasets
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap
OLIG1 1 dataset
Motif DE_12h DE_12h-OLIG1_MA0826.1 10 bp overlap
OLIG2 1 dataset
Motif DE_12h DE_12h-OLIG2_MA0678.1 10 bp overlap
OLIG3 1 dataset
Motif DE_12h DE_12h-OLIG3_MA0827.1 10 bp overlap
OSR2 2 datasets
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
Motif DE_48h DE_48h-OSR2_MA1646.2 8 bp overlap
PDX1 1 dataset
Motif DE_48h DE_48h-PDX1_MA0132.3 6 bp overlap
PHOX2B 1 dataset
Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
POU6F1 1 dataset
Motif DE_48h DE_48h-POU6F1_MA0628.2 6 bp overlap
POU6F2 1 dataset
Motif DE_48h DE_48h-POU6F2_MA0793.2 9 bp overlap
PRRX1 1 dataset
Motif DE_48h DE_48h-PRRX1_MA0716.2 6 bp overlap
PRRX2 1 dataset
Motif DE_48h DE_48h-PRRX2_MA0075.4 7 bp overlap
Pax7 2 datasets
Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap
Motif DE_48h DE_48h-Pax7_MA0680.3 10 bp overlap
Prdm15 2 datasets
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
Motif DE_48h DE_48h-Prdm15_MA1616.2 11 bp overlap
Prdm5 1 dataset
Motif DE_48h DE_48h-Prdm5_MA1999.2 11 bp overlap
Ptf1A 3 datasets
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
Motif DE_48h DE_48h-Ptf1A_MA1620.2 8 bp overlap
Motif DE_48h DE_48h-Ptf1A_MA1620.2 8 bp overlap
RAX 2 datasets
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap
RAX2 1 dataset
Motif DE_48h DE_48h-RAX2_MA0717.2 6 bp overlap
RBPJ 2 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
SCRT1 1 dataset
Motif DE_48h DE_48h-SCRT1_MA0743.3 10 bp overlap
SHOX 1 dataset
Motif DE_48h DE_48h-SHOX_MA0630.2 6 bp overlap
SNAI2 1 dataset
Motif DE_48h DE_48h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_48h DE_48h-SNAI3_MA1559.2 9 bp overlap
SPIB 2 datasets
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Motif DE_48h DE_48h-SPIB_MA0081.3 13 bp overlap
STAT1 2 datasets
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
Motif DE_48h DE_48h-STAT1_MA0137.4 9 bp overlap
STAT3 2 datasets
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Motif DE_48h DE_48h-STAT3_MA0144.3 9 bp overlap
Shox2 1 dataset
Motif DE_48h DE_48h-Shox2_MA0720.2 6 bp overlap
Stat4 2 datasets
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
Motif DE_48h DE_48h-Stat4_MA0518.2 10 bp overlap
Stat5a 2 datasets
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
Motif DE_48h DE_48h-Stat5a_MA1624.2 9 bp overlap
Stat5b 2 datasets
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
Motif DE_48h DE_48h-Stat5b_MA1625.2 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 184 bp overlap
TBR1 2 datasets
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
Motif DE_48h DE_48h-TBR1_MA0802.2 9 bp overlap
TBX1 2 datasets
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap
TBX15 2 datasets
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
Motif DE_48h DE_48h-TBX15_MA0803.1 8 bp overlap
TBX18 3 datasets
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
TBX19 1 dataset
Motif DE_48h DE_48h-TBX19_MA0804.2 17 bp overlap
TBX2 2 datasets
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
TBX21 2 datasets
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap
TBX3 2 datasets
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap
TBX4 2 datasets
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
Motif DE_48h DE_48h-TBX4_MA0806.1 8 bp overlap
TBX5 2 datasets
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
Motif DE_48h DE_48h-TBX5_MA0807.1 8 bp overlap
TBXT 1 dataset
Motif DE_48h DE_48h-TBXT_MA0009.2 16 bp overlap
TCF21 1 dataset
Motif DE_12h DE_12h-TCF21_MA1568.2 10 bp overlap
TLX2 1 dataset
Motif DE_48h DE_48h-TLX2_MA1577.2 6 bp overlap
Tbx6 3 datasets
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
UNCX 1 dataset
Motif DE_48h DE_48h-UNCX_MA0721.2 6 bp overlap
VAX1 1 dataset
Motif DE_48h DE_48h-VAX1_MA0722.2 7 bp overlap
VAX2 1 dataset
Motif DE_48h DE_48h-VAX2_MA0723.3 6 bp overlap
VENTX 2 datasets
Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap
Motif DE_48h DE_48h-VENTX_MA0724.1 9 bp overlap
VSX1 1 dataset
Motif DE_48h DE_48h-VSX1_MA0725.2 7 bp overlap
VSX2 1 dataset
Motif DE_48h DE_48h-VSX2_MA0726.2 7 bp overlap
ZBTB18 2 datasets
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
Motif DE_48h DE_48h-ZBTB18_MA0698.2 11 bp overlap
ZEB1 3 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
ZKSCAN5 2 datasets
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_48h DE_48h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF324 1 dataset
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
ZNF449 1 dataset
Motif DE_48h DE_48h-ZNF449_MA1656.2 10 bp overlap
ZNF558 1 dataset
Motif DE_48h DE_48h-ZNF558_MA2335.1 29 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF75A 1 dataset
Motif DE_48h DE_48h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 1 dataset
Motif DE_48h DE_48h-ZNF75D_MA1601.2 12 bp overlap
ZSCAN16 2 datasets
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
Motif DE_48h DE_48h-ZSCAN16_MA2100.1 18 bp overlap
mix-a 1 dataset
Motif DE_48h DE_48h-mix-a_MA0621.2 7 bp overlap