chr3 : 98,325,036 98,325,386
350 bp 70 TFs 1 linked gene
This 350 bp open chromatin element is linked to ENSG00000289509 and is bound by 70 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ENSG00000289509 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:98,320,036 – 98,330,386
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
AR 15 datasets
ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-744 264 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 157 bp overlap
ChIP LNCaP_DHT GSE43720.AR.LNCaP_DHT 163 bp overlap
ChIP VCaP GSE148358.AR.VCaP 189 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 60 bp overlap
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 192 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.AR.primary-prostate-cancer_P2_DSG 75 bp overlap
ChIP prostate GSE65478.AR.prostate 117 bp overlap
ChIP prostate-cancer_PDX_58 GSE130408.AR.prostate-cancer_PDX_58 67 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.AR.prostate-cancer_PDX_92 57 bp overlap
ChIP prostate_1798_T GSE130408.AR.prostate_1798_T 61 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 198 bp overlap
ChIP prostate_4024_T GSE130408.AR.prostate_4024_T 284 bp overlap
ChIP prostate_P23_T GSE130408.AR.prostate_P23_T 142 bp overlap
ChIP prostate_P25 GSE130408.AR.prostate_P25 264 bp overlap
ARNT 1 dataset
ChIP MCF-7_Ctrl GSE85352.ARNT.MCF-7_Ctrl 263 bp overlap
BCL11A 1 dataset
Motif DE_12h DE_12h-BCL11A_MA2324.1 7 bp overlap
BRD2 4 datasets
ChIP HCC1806_BAZ2B_JQ1 GSE116879.BRD2.HCC1806_BAZ2B_JQ1 350 bp overlap
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 350 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 350 bp overlap
ChIP HCC1806_NTsiRNA_JQ1 GSE116879.BRD2.HCC1806_NTsiRNA_JQ1 224 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 346 bp overlap
BRD4 5 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 309 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 259 bp overlap
ChIP LNCaP-C4-2_F133V_JQ1 GSE88871.BRD4.LNCaP-C4-2_F133V_JQ1 215 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 350 bp overlap
ChIP hESC GSE33281.BRD4.hESC 236 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 158 bp overlap
CHD1 2 datasets
ChIP H1 ENCFF998XEK 129 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 159 bp overlap
CREB1 3 datasets
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 281 bp overlap
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 268 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 103 bp overlap
CTCF 13 datasets
ChIP 22Rv1 ENCFF466OXN 350 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 293 bp overlap
ChIP GM23338 ENCFF772DML 185 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 177 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 177 bp overlap
ChIP MCF-7 ENCFF198DQX 226 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF494VXA 217 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCFF954TUV 205 bp overlap
ChIP bronchial epithelial cell ENCFF500SEA 220 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 96 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 251 bp overlap
ChIP BLaER1 ENCFF460KDD 153 bp overlap
Dmrt1 1 dataset
Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap
E2F1 1 dataset
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 323 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 350 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 327 bp overlap
ESR1 1 dataset
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 259 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 120 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXA1 52 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 278 bp overlap
ChIP 22Rv1 GSE85558.FOXA1.22Rv1 197 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 350 bp overlap
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 320 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 329 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 281 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 200 bp overlap
ChIP 22Rv1_TFS GSE123618.FOXA1.22Rv1_TFS 115 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 275 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 290 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 79 bp overlap
ChIP LNCaP GSE56288.FOXA1.LNCaP 76 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 334 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 185 bp overlap
ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 249 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 235 bp overlap
ChIP LNCaP_GSK-48H GSE114266.FOXA1.LNCaP_GSK-48H 58 bp overlap
ChIP LNCaP_S2101-4H GSE114266.FOXA1.LNCaP_S2101-4H 350 bp overlap
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 281 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 203 bp overlap
ChIP MCF-7 GSE59530.FOXA1.MCF-7 181 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 184 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 215 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 154 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 178 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 176 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 261 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 264 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 237 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 219 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 252 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 247 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 232 bp overlap
ChIP breast-cancer_ENOB-2848 GSE128018.FOXA1.breast-cancer_ENOB-2848 229 bp overlap
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 264 bp overlap
ChIP breast-cancer_ENOB-2852 GSE128018.FOXA1.breast-cancer_ENOB-2852 218 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 264 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 250 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 248 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 339 bp overlap
ChIP primary-prostate-cancer_P1_DSG GSE114737.FOXA1.primary-prostate-cancer_P1_DSG 213 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 350 bp overlap
ChIP prostate-cancer_PDX_136 GSE130408.FOXA1.prostate-cancer_PDX_136 219 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 307 bp overlap
ChIP prostate_2030_T GSE130408.FOXA1.prostate_2030_T 258 bp overlap
ChIP prostate_2078_T GSE130408.FOXA1.prostate_2078_T 260 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 262 bp overlap
ChIP prostate_2483_T GSE130408.FOXA1.prostate_2483_T 244 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 288 bp overlap
ChIP prostate_P27_T GSE130408.FOXA1.prostate_P27_T 267 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 255 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 301 bp overlap
FOXA2 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 213 bp overlap
FOXB1 1 dataset
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
GATA1 1 dataset
Motif DE_12h DE_12h-GATA1_MA0035.5 7 bp overlap
GATA6 2 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 163 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 77 bp overlap
HIF1A 1 dataset
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.HIF1A.LNCaP_androgen-N_hypoxia-Y 266 bp overlap
HNF4A 1 dataset
ChIP IM95 GSE114018.HNF4A.IM95 132 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 123 bp overlap
HOXB13 20 datasets
ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 131 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 63 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 229 bp overlap
ChIP prostate_2030_T GSE130408.HOXB13.prostate_2030_T 241 bp overlap
ChIP prostate_2078_T GSE130408.HOXB13.prostate_2078_T 260 bp overlap
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 291 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 233 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 270 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 316 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 247 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 274 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 312 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 253 bp overlap
ChIP prostate_P23 GSE130408.HOXB13.prostate_P23 253 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 186 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 350 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 294 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 323 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 165 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 341 bp overlap
HOXD11 1 dataset
Motif DE_12h DE_12h-HOXD11_MA0908.2 9 bp overlap
KLF1 1 dataset
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF2 1 dataset
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF4 2 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 245 bp overlap
KLF5 2 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
ChIP KATO-III GSE51705.KLF5.KATO-III 213 bp overlap
MAX 10 datasets
ChIP H1 ENCFF601FOM 274 bp overlap
ChIP H1 ENCFF914VQY 251 bp overlap
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 204 bp overlap
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 156 bp overlap
ChIP HepG2 ENCFF479OHI 350 bp overlap
ChIP MCF-7 ENCFF169IXS 201 bp overlap
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 229 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 204 bp overlap
ChIP WTC11 ENCFF223QFY 350 bp overlap
ChIP WTC11 ENCFF223QFY 287 bp overlap
MED1 1 dataset
ChIP VCaP GSE148358.MED1.VCaP 242 bp overlap
MNT 2 datasets
ChIP MCF-7 ENCFF144ZFZ 350 bp overlap
ChIP MCF-7 ENCSR663ZZZ.MNT.MCF-7 350 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 126 bp overlap
MYC 7 datasets
ChIP LNCaP GSE117430.MYC.LNCaP 276 bp overlap
ChIP LNCaP_MYC GSE73994.MYC.LNCaP_MYC 325 bp overlap
ChIP MCF-7 ENCFF394LGD 268 bp overlap
ChIP MCF-7 ENCFF542NWJ 254 bp overlap
ChIP MCF-7 ENCSR000DMQ.MYC.MCF-7 149 bp overlap
ChIP OVCAR-3 GSE154941.MYC.OVCAR-3 243 bp overlap
ChIP WA01 ENCSR000EBY.MYC.WA01 163 bp overlap
MYCN 4 datasets
ChIP 22Rv1_castrated GSE117304.MYCN.22Rv1_castrated 291 bp overlap
ChIP 22Rv1_intact GSE117304.MYCN.22Rv1_intact 350 bp overlap
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 350 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 350 bp overlap
NANOG 2 datasets
ChIP WA01 ERP004238.NANOG.WA01 348 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 195 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 165 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 251 bp overlap
POLR2A 8 datasets
ChIP GM23338 ENCFF450WCS 264 bp overlap
ChIP GM23338 ENCFF450WCS 142 bp overlap
ChIP H1 ENCFF566JSR 265 bp overlap
ChIP H1 ENCFF770YBQ 320 bp overlap
ChIP H1 ENCFF770YBQ 291 bp overlap
ChIP H1 ENCFF833NJP 350 bp overlap
ChIP prostate gland ENCFF881OMH 151 bp overlap
ChIP stomach ENCFF820WZN 87 bp overlap
POU1F1 2 datasets
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F1 4 datasets
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 317 bp overlap
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 312 bp overlap
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F2 2 datasets
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F4 2 datasets
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1 1 dataset
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
POU5F1B 2 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 214 bp overlap
REST 1 dataset
ChIP GM23338 ENCSR871KYB.REST.GM23338 143 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 342 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 350 bp overlap
TBP 5 datasets
ChIP H1 ENCFF859IIO 219 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 331 bp overlap
ChIP hESC GSE122298.TBP.hESC 346 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 350 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 346 bp overlap
TCF7L2 1 dataset
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 205 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 345 bp overlap
USF1 3 datasets
ChIP H1 ENCFF090WVU 228 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 208 bp overlap
ChIP WTC11 ENCFF699QGS 350 bp overlap
USF2 1 dataset
ChIP Hep-G2 GSE97661.USF2.Hep-G2 153 bp overlap
XBP1 2 datasets
ChIP LNCaP_Tg GSE121880.XBP1.LNCaP_Tg 350 bp overlap
ChIP LNCaP_px330 GSE121880.XBP1.LNCaP_px330 281 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 274 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 188 bp overlap
ZBTB18 1 dataset
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZNF143 1 dataset
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 239 bp overlap
ZNF157 1 dataset
Motif DE_12h DE_12h-ZNF157_MA2331.1 21 bp overlap
ZNF214 1 dataset
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
ZNF644 1 dataset
ChIP HepG2 ENCFF352VGJ 234 bp overlap