chr3 : 60,669,673 60,670,166
493 bp 70 TFs 0 linked genes
This 493 bp open chromatin element has no linked target genes and is bound by 70 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:60,664,673 – 60,675,166
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 261 bp overlap
BCL11A 4 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 282 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 158 bp overlap
BCOR 2 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 162 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 251 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 146 bp overlap
CHD7 4 datasets
ChIP H1 ENCFF126NLU 493 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 257 bp overlap
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 256 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 440 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 105 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 298 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 346 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 286 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 287 bp overlap
ChIP hESC GSE17917.EP300.hESC 472 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D40 GSE139377.ERG.aortic-endothelial-cell_D40 165 bp overlap
ETS1 2 datasets
ChIP GM23338 ENCFF701IZH 368 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 235 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 493 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 493 bp overlap
ChIP DE DE-FOXA2-2 493 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 243 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 362 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 493 bp overlap
ChIP DE DE-GATA4-2 493 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 493 bp overlap
ChIP DE DE-GATA6-2 493 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 256 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 493 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 395 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 493 bp overlap
GFI1 1 dataset
Motif DE_60h DE_60h-GFI1_MA0038.3 11 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 331 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 412 bp overlap
ChIP H1 ENCFF353UJQ 493 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 309 bp overlap
JUN 3 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 463 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 283 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 239 bp overlap
JUND 3 datasets
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 95 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 132 bp overlap
KLF4 2 datasets
ChIP WA09 GSE105028.KLF4.WA09 209 bp overlap
ChIP WA09_heat-shock GSE105028.KLF4.WA09_heat-shock 265 bp overlap
LEF1 1 dataset
ChIP hESC GSE64758.LEF1.hESC 246 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 230 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 493 bp overlap
MEF2C 1 dataset
Motif ES_0h ES_0h-MEF2C_MA0497.2 11 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 303 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 157 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 349 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 460 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 472 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 342 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 493 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 493 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 493 bp overlap
ChIP hESC GSE20650.NANOG.hESC 373 bp overlap
ChIP hESC GSE18292.NANOG.hESC 189 bp overlap
NIPBL 6 datasets
ChIP WA09 GSE105028.NIPBL.WA09 419 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 328 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 260 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 255 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 193 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 275 bp overlap
Nfat5 1 dataset
Motif ES_0h ES_0h-Nfat5_MA0606.3 8 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF566JSR 493 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 241 bp overlap
POU5F1 9 datasets
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 440 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 493 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 403 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 439 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 235 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 493 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 253 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 267 bp overlap
PRDM14 1 dataset
ChIP hESC GSE138674.PRDM14.hESC 265 bp overlap
Prdm5 1 dataset
Motif DE_60h DE_60h-Prdm5_MA1999.2 11 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 174 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 315 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 371 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 412 bp overlap
REST 3 datasets
ChIP H1 ENCFF429RUE 244 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 175 bp overlap
ChIP neural ENCSR000BTV.REST.neural 209 bp overlap
Rhox11 1 dataset
Motif DE_60h DE_60h-Rhox11_MA0629.2 9 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 108 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 113 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 162 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 493 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 390 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 471 bp overlap
SMAD3 5 datasets
ChIP BG03 GSE21614.SMAD3.BG03 259 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 263 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 245 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 180 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 213 bp overlap
SMARCA2 2 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 158 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 244 bp overlap
SMARCA4 8 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 166 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 253 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 402 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 210 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 222 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 446 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 426 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 341 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 256 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 344 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 246 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 298 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 328 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 383 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 486 bp overlap
SOX2 8 datasets
ChIP H9 GSE46837.SOX2.H9 323 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 493 bp overlap
ChIP hESC GSE69479.SOX2.hESC 262 bp overlap
ChIP hESC GSE18292.SOX2.hESC 106 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 436 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 303 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 326 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 278 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 390 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 275 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 310 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 339 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 215 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 314 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 313 bp overlap
TEAD4 5 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 321 bp overlap
ChIP H1 ENCFF778PAX 154 bp overlap
ChIP WTC11 ENCFF114TZS 237 bp overlap
ChIP WTC11 ENCFF114TZS 341 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 341 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 493 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 493 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 280 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 304 bp overlap
ZNF143 1 dataset
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 194 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 378 bp overlap
ZNF274 1 dataset
Motif DE_60h DE_60h-ZNF274_MA1592.2 12 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 222 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 255 bp overlap
ZNF677 1 dataset
Motif DE_60h DE_60h-ZNF677_MA2101.1 12 bp overlap
ZNF680 1 dataset
Motif DE_60h DE_60h-ZNF680_MA1729.2 11 bp overlap
ZNF75A 1 dataset
Motif DE_60h DE_60h-ZNF75A_MA2097.1 12 bp overlap