chr3 : 27,673,175 27,674,126
951 bp 88 TFs 0 linked genes
This 951 bp open chromatin element has no linked target genes and is bound by 88 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:27,668,175 – 27,679,126
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
ATF4 1 dataset
Motif DE_60h DE_60h-ATF4_MA0833.3 10 bp overlap
BRD4 4 datasets
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 243 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 52 bp overlap
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 195 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 241 bp overlap
CDK8 2 datasets
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 195 bp overlap
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 450 bp overlap
CDK9 1 dataset
ChIP MV4-11_DMSO GSE82116.CDK9.MV4-11_DMSO 172 bp overlap
CEBPG 1 dataset
Motif DE_60h DE_60h-CEBPG_MA1636.2 10 bp overlap
Crx 1 dataset
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
DUX4 1 dataset
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_60h DE_60h-DUXA_MA0884.2 13 bp overlap
Dux 1 dataset
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
ESRRA 1 dataset
Motif DE_60h DE_60h-ESRRA_MA0592.4 9 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 325 bp overlap
ETV2 1 dataset
ChIP induced-endothelial-cell_Veh GSE123906.ETV2.induced-endothelial-cell_Veh 180 bp overlap
EVI1 2 datasets
ChIP SKH1 GSE87283.EVI1.SKH1 227 bp overlap
ChIP SKH1_10d GSE87283.EVI1.SKH1_10d 206 bp overlap
Esrrg 1 dataset
Motif DE_60h DE_60h-Esrrg_MA0643.2 9 bp overlap
FLI1 2 datasets
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 321 bp overlap
ChIP NB4 GSE23730.FLI1.NB4 227 bp overlap
FOXA1 2 datasets
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 282 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 257 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 849 bp overlap
ChIP DE DE-FOXA2-2 677 bp overlap
GATA2 2 datasets
ChIP SKH1 GSE87283.GATA2.SKH1 394 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 293 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 596 bp overlap
ChIP DE DE-GATA4-2 727 bp overlap
ChIP foregut GSE117136.GATA4.foregut 463 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 418 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 554 bp overlap
ChIP DE DE-GATA6-2 685 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 455 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 365 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 377 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 554 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 493 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 383 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 273 bp overlap
ChIP foregut GSE117136.GATA6.foregut 327 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 427 bp overlap
GSC 1 dataset
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 204 bp overlap
JMJD1C 3 datasets
ChIP HL-60 GSE63484.JMJD1C.HL-60 164 bp overlap
ChIP NB4 GSE63484.JMJD1C.NB4 164 bp overlap
ChIP THP-1 GSE63484.JMJD1C.THP-1 152 bp overlap
JUN 1 dataset
Motif DE_60h DE_60h-JUN_MA0488.2 10 bp overlap
JUND 1 dataset
ChIP Kasumi-1_ctrl GSE117105.JUND.Kasumi-1_ctrl 200 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 216 bp overlap
KLF1 1 dataset
Motif DE_60h DE_60h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_60h DE_60h-KLF10_MA1511.2 9 bp overlap
KLF14 1 dataset
Motif DE_60h DE_60h-KLF14_MA0740.2 9 bp overlap
KLF2 1 dataset
Motif DE_60h DE_60h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif DE_60h DE_60h-KLF4_MA0039.5 8 bp overlap
KLF5 2 datasets
Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 175 bp overlap
KLF6 1 dataset
Motif DE_60h DE_60h-KLF6_MA1517.2 9 bp overlap
KMT2A 1 dataset
ChIP OCI-AML-3_VTP GSE129636.KMT2A.OCI-AML-3_VTP 254 bp overlap
KMT2B 2 datasets
ChIP AML GSE112074.KMT2B.AML 218 bp overlap
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 447 bp overlap
MECOM 2 datasets
ChIP SKH1_CEBPA-ER_E2 GSE102697.MECOM.SKH1_CEBPA-ER_E2 151 bp overlap
ChIP SKH1_E2 GSE102697.MECOM.SKH1_E2 192 bp overlap
MYB 2 datasets
ChIP THP-1 GSE90769.MYB.THP-1 367 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 206 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 246 bp overlap
NFYA 1 dataset
Motif DE_60h DE_60h-NFYA_MA0060.4 8 bp overlap
NFYC 1 dataset
Motif DE_60h DE_60h-NFYC_MA1644.2 7 bp overlap
NR4A1 1 dataset
ChIP MOLM-14_DHE GSE124963.NR4A1.MOLM-14_DHE 283 bp overlap
NR5A1 1 dataset
Motif DE_60h DE_60h-NR5A1_MA1540.3 12 bp overlap
Nr5A2 1 dataset
Motif DE_60h DE_60h-Nr5A2_MA0505.3 9 bp overlap
OTX1 1 dataset
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_60h DE_60h-OTX2_MA0712.3 7 bp overlap
PITX1 1 dataset
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
RARA 1 dataset
Motif DE_60h DE_60h-RARA_MA0729.1 18 bp overlap
RHOXF1 1 dataset
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
RUNX1 6 datasets
ChIP ME-1 GSE117138.RUNX1.ME-1 239 bp overlap
ChIP ME-1_KD GSE128771.RUNX1.ME-1_KD 239 bp overlap
ChIP NB4 GSE81992.RUNX1.NB4 316 bp overlap
ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 199 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 148 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 200 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 175 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 358 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 244 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 257 bp overlap
SMARCA4 3 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 346 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 369 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 232 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 297 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 338 bp overlap
SP1 1 dataset
Motif DE_60h DE_60h-SP1_MA0079.5 9 bp overlap
SP4 1 dataset
Motif DE_60h DE_60h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
SPI1 34 datasets
ChIP BDMC_donorH GSE128834.SPI1.BDMC_donorH 156 bp overlap
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 279 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 396 bp overlap
ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 195 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 349 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 230 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 303 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 303 bp overlap
ChIP GM12878 ENCFF134LCP 178 bp overlap
ChIP GM12891 ENCFF563IUT 106 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 221 bp overlap
ChIP HL-60 ENCFF645GBT 207 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 356 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 167 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 109 bp overlap
ChIP K562 ENCFF410ORC 205 bp overlap
ChIP KG-1 GSE128834.SPI1.KG-1 289 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 282 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 294 bp overlap
ChIP NB4 GSE128834.SPI1.NB4 345 bp overlap
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 217 bp overlap
ChIP OCI-Ly10 GSE56857.SPI1.OCI-Ly10 193 bp overlap
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 155 bp overlap
ChIP RS4-11_DEX GSE71616.SPI1.RS4-11_DEX 295 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 217 bp overlap
ChIP THP-1_DIFF GSE25426.SPI1.THP-1_DIFF 186 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 317 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 226 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 240 bp overlap
ChIP primary-B-cell_donorA GSE128834.SPI1.primary-B-cell_donorA 248 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 204 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 182 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 140 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 169 bp overlap
SPIB 4 datasets
Motif DE_60h DE_60h-SPIB_MA0081.3 13 bp overlap
ChIP OCI-Ly10 GSE56857.SPIB.OCI-Ly10 256 bp overlap
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 351 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 311 bp overlap
Spi1 1 dataset
Motif DE_60h DE_60h-Spi1_MA0080.7 13 bp overlap
TBX21 1 dataset
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
TCF12 1 dataset
ChIP ME-1 GSE46044.TCF12.ME-1 228 bp overlap
THRA 1 dataset
Motif DE_60h DE_60h-THRA_MA1969.2 18 bp overlap
TRIM24 2 datasets
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 423 bp overlap
ChIP MOLM-13_dTRIM24 GSE100571.TRIM24.MOLM-13_dTRIM24 417 bp overlap
VEZF1 2 datasets
Motif DE_60h DE_60h-VEZF1_MA1578.2 6 bp overlap
Motif DE_60h DE_60h-VEZF1_MA1578.2 6 bp overlap
ZFP14 1 dataset
Motif DE_60h DE_60h-ZFP14_MA1972.1 15 bp overlap
ZIC1 1 dataset
Motif DE_60h DE_60h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_60h DE_60h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_60h DE_60h-ZIC5_MA1584.2 15 bp overlap
ZNF148 1 dataset
Motif DE_60h DE_60h-ZNF148_MA1653.2 10 bp overlap
ZNF189 1 dataset
Motif DE_60h DE_60h-ZNF189_MA1725.2 9 bp overlap
ZNF274 1 dataset
Motif DE_60h DE_60h-ZNF274_MA1592.2 12 bp overlap
ZNF281 1 dataset
Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap
ZNF320 1 dataset
Motif DE_60h DE_60h-ZNF320_MA1976.2 20 bp overlap
ZNF341 1 dataset
Motif DE_60h DE_60h-ZNF341_MA1655.2 8 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 457 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 483 bp overlap
ZNF528 1 dataset
Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap
ZNF701 2 datasets
Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap
Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap
ZNF740 1 dataset
Motif DE_60h DE_60h-ZNF740_MA0753.3 10 bp overlap
Zic2 1 dataset
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap