chr3 : 16,999,874 17,000,202
328 bp 98 TFs 0 linked genes
This 328 bp open chromatin element has no linked target genes and is bound by 98 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:16,994,874 – 17,005,202
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
98 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 152 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 260 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 289 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 203 bp overlap
DPRX 1 dataset
Motif DE_12h DE_12h-DPRX_MA1480.2 9 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
Dux 1 dataset
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 285 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 197 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 139 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FOXA1 1 dataset
ChIP breast_tumor_Female_1 GSE104399.FOXA1.breast_tumor_Female_1 327 bp overlap
FOXB1 1 dataset
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
FOXD2 1 dataset
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
Foxq1 1 dataset
Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 236 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IKZF2 3 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 133 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 301 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 298 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 260 bp overlap
ChIP H1 ENCFF747ZPQ 235 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 328 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 328 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 319 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 328 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 328 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 328 bp overlap
ChIP hESC GSE18292.NANOG.hESC 259 bp overlap
ChIP hESC GSE20650.NANOG.hESC 246 bp overlap
NR1I3 1 dataset
Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR2F1 2 datasets
Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap
Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap
NR2F2 1 dataset
Motif DE_12h DE_12h-NR2F2_MA1111.2 7 bp overlap
NR4A1 3 datasets
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
ChIP Kasumi-1 GSE79491.NR4A1.Kasumi-1 328 bp overlap
NR4A2 2 datasets
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
Nfe2l2 1 dataset
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Nr2f6 1 dataset
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 221 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 234 bp overlap
ChIP H1 ENCFF833NJP 308 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1 8 datasets
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 328 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 198 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 195 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 216 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 328 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 328 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 207 bp overlap
PPARD 1 dataset
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
PRDM14 3 datasets
ChIP hESC GSE22767.PRDM14.hESC 328 bp overlap
ChIP hESC GSE138674.PRDM14.hESC 151 bp overlap
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 266 bp overlap
Ppara 1 dataset
Motif DE_12h DE_12h-Ppara_MA2338.1 7 bp overlap
RNF2 3 datasets
ChIP WA01 GSE104690.RNF2.WA01 215 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 328 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 226 bp overlap
RXRA 1 dataset
ChIP WA01 ENCSR000BJW.RXRA.WA01 272 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_WT GSE138496.SMAD2-3.HGrC1_WT 120 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 328 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 274 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 319 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 326 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 290 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 328 bp overlap
SOX10 2 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 200 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 328 bp overlap
SOX4 2 datasets
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 278 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 323 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SPI1 1 dataset
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 206 bp overlap
SPIB 2 datasets
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
Sox6 2 datasets
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Spi1 2 datasets
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TBXT 1 dataset
Motif DE_12h DE_12h-TBXT_MA0009.2 16 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 228 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 209 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 266 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 241 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1574.2 13 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 239 bp overlap
ZKSCAN5 2 datasets
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF136 1 dataset
Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap
ZNF143 1 dataset
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 188 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 175 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap