chr2 : 148,998,911 149,000,002
1,091 bp 79 TFs 4 linked genes
This 1.1 kb open chromatin element is linked to 4 target genes and is bound by 79 transcription factors.
Linked Genes
4 genes
Link type
Gene Expression Dist. to TSS Distance Link type
LYPD6B 38.6 kb Distal Multiome
KIF5C-AS1 111.0 kb Distal Multiome
KIF5C 124.2 kb Distal Multiome
EPC2 354.7 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:148,993,911 – 149,005,002
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
79 transcription factors
Source
Cell type
AR 2 datasets
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 239 bp overlap
ChIP prostate_2815_T GSE130408.AR.prostate_2815_T 215 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 457 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 604 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 147 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 149 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 366 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 210 bp overlap
BRD4 2 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 361 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 285 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 94 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 597 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 132 bp overlap
CTCF 3 datasets
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 246 bp overlap
ChIP Kasumi-1_ctrl GSE121280.CTCF.Kasumi-1_ctrl 91 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 251 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
EZH2 1 dataset
ChIP A-1847 GSE95643.EZH2.A-1847 410 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 441 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 324 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 155 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXA1 6 datasets
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 199 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 406 bp overlap
ChIP prostate-cancer_PDX_136 GSE130408.FOXA1.prostate-cancer_PDX_136 96 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 181 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 183 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 180 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 718 bp overlap
HOXB13 14 datasets
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 166 bp overlap
ChIP prostate_2030_T GSE130408.HOXB13.prostate_2030_T 235 bp overlap
ChIP prostate_2078 GSE130408.HOXB13.prostate_2078 177 bp overlap
ChIP prostate_2078_T GSE130408.HOXB13.prostate_2078_T 181 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 164 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 156 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 270 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 189 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 188 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 189 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 206 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 231 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 250 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 326 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JUN 1 dataset
ChIP 786-O GSE86092.JUN.786-O 196 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 308 bp overlap
KLF4 2 datasets
ChIP HAP1 GSE130417.KLF4.HAP1 193 bp overlap
ChIP HAP1 GSE130417.KLF4.HAP1 411 bp overlap
KLF5 1 dataset
ChIP ESO-26 GSE132680.KLF5.ESO-26 400 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 250 bp overlap
MGA 1 dataset
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
MNT 2 datasets
ChIP Hep-G2 ENCSR261EDU.MNT.Hep-G2 249 bp overlap
ChIP HepG2 ENCFF701PYP 230 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 946 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 559 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 255 bp overlap
NFIB 1 dataset
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
PAX3 1 dataset
Motif DE_12h DE_12h-PAX3_MA1546.2 14 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 198 bp overlap
POLR2A 1 dataset
ChIP prostate gland ENCFF881OMH 373 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU4F2 1 dataset
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
POU5F1 2 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 753 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 947 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 711 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 759 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 671 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 273 bp overlap
RNF2 1 dataset
ChIP fibroblast GSE139053.RNF2.fibroblast 518 bp overlap
SMARCA4 3 datasets
ChIP NSC GSE125033.SMARCA4.NSC 635 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 630 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 755 bp overlap
SMARCB1 3 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 385 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 370 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 381 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 287 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 654 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 214 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SREBF1 1 dataset
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 344 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF398 1 dataset
ChIP BG01V GSE133630.ZNF398.BG01V 177 bp overlap
ZNF416 1 dataset
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF547 1 dataset
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
ZNF675 1 dataset
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 216 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap