chr2 : 111,200,236 – 111,200,899
663 bp 79 TFs 2 linked genes
This 663 bp open chromatin element is linked to BCL2L11 and MIR4435-2HG and is bound by 79 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
BCL2L11 79.5 kb Distal Multiome
MIR4435-2HG 294.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:111,195,236 – 111,205,899
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
79 transcription factors
Source
Cell type
AR 1 dataset
ChIP myofibroblast GSE90772.AR.myofibroblast 288 bp overlap
ASCL1 4 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 160 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 148 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 114 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 215 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 165 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 352 bp overlap
BATF 1 dataset
ChIP GM12878 ENCFF954REE 231 bp overlap
BCL11A 1 dataset
ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 227 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 209 bp overlap
BMI1 1 dataset
ChIP GM12878 ENCSR469WII.BMI1.GM12878 89 bp overlap
BRD4 8 datasets
ChIP CLL_patient1_4h_CpG_BET GSE109411.BRD4.CLL_patient1_4h_CpG_BET 289 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 638 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 463 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 347 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 169 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 509 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 542 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 456 bp overlap
CTCF 13 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 247 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 248 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 130 bp overlap
ChIP A549 ENCFF182TCQ 217 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP HepG2 ENCFF757EKU 351 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 181 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 108 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 201 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 144 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 121 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 125 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 447 bp overlap
ChIP BLaER1 ENCFF274GAT 270 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 488 bp overlap
ELF1 1 dataset
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 184 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 162 bp overlap
ERG 4 datasets
ChIP Jurkat GSE49091.ERG.Jurkat 160 bp overlap
ChIP SEM GSE117864.ERG.SEM 329 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 242 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 344 bp overlap
ESR1 2 datasets
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 378 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 314 bp overlap
FIP1L1 1 dataset
ChIP Hep-G2 ENCSR313VZG.FIP1L1.Hep-G2 285 bp overlap
FLI1 1 dataset
ChIP SEM GSE117864.FLI1.SEM 189 bp overlap
FOXA1 2 datasets
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 164 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 243 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 427 bp overlap
ChIP DE DE-FOXA2-2 386 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 251 bp overlap
GABPB1 1 dataset
ChIP HepG2 ENCFF315AWN 581 bp overlap
GATA2 4 datasets
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 541 bp overlap
ChIP SH-SY5Y ENCFF485YIB 377 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 286 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 159 bp overlap
GATA3 5 datasets
ChIP Jurkat GSE76181.GATA3.Jurkat 278 bp overlap
ChIP Jurkat GSE68976.GATA3.Jurkat 230 bp overlap
ChIP Jurkat GSE120063.GATA3.Jurkat 225 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 213 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 159 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 349 bp overlap
ChIP DE DE-GATA4-2 355 bp overlap
ChIP foregut GSE117136.GATA4.foregut 327 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 383 bp overlap
ChIP DE DE-GATA6-2 386 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 273 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 380 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 229 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 357 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 376 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 316 bp overlap
ChIP foregut GSE117136.GATA6.foregut 374 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 274 bp overlap
GATAD2B 1 dataset
ChIP GM12878 ENCSR828NCB.GATAD2B.GM12878 351 bp overlap
GSPT2 1 dataset
ChIP HEK293T GSE35197.GSPT2.HEK293T 396 bp overlap
GTF2F1 1 dataset
ChIP GM12878 ENCSR769ZTN.GTF2F1.GM12878 177 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF824TGK 523 bp overlap
ChIP K-562 ENCSR395HWC.IKZF1.K-562 287 bp overlap
IKZF2 2 datasets
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 504 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 497 bp overlap
IRF4 1 dataset
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 210 bp overlap
JUN 2 datasets
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 184 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 220 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 334 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 176 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 265 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 373 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 344 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 462 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 243 bp overlap
MYB 1 dataset
ChIP Jurkat GSE59657.MYB.Jurkat 401 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 209 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 315 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 285 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 153 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 262 bp overlap
NFYB 3 datasets
ChIP GM12878 ENCFF474DNH 260 bp overlap
ChIP GM12878 ENCSR000DNM.NFYB.GM12878 142 bp overlap
ChIP Hep-G2 ENCSR935GZV.NFYB.Hep-G2 127 bp overlap
NFYC 1 dataset
ChIP Hep-G2 ENCSR569ARC.NFYC.Hep-G2 148 bp overlap
NIPBL 1 dataset
ChIP LCL GSE38395.NIPBL.LCL 208 bp overlap
NR2C1 1 dataset
ChIP GM12878 ENCFF101ELO 357 bp overlap
NR2F1 2 datasets
ChIP GM12878 ENCFF273VKX 298 bp overlap
ChIP GM12878 ENCSR514VYD.NR2F1.GM12878 444 bp overlap
NUTM1 2 datasets
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 328 bp overlap
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 109 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 249 bp overlap
PAX5 2 datasets
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 466 bp overlap
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 327 bp overlap
PCBP2 2 datasets
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 134 bp overlap
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 153 bp overlap
POU5F1 1 dataset
ChIP SKM-1 GSE93706.POU5F1.SKM-1 245 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 362 bp overlap
PTBP1 1 dataset
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 279 bp overlap
RAD21 10 datasets
ChIP A549 ENCFF047SFC 251 bp overlap
ChIP GP5D GSE51234.RAD21.GP5D 265 bp overlap
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 156 bp overlap
ChIP HepG2 ENCFF360ZSW 217 bp overlap
ChIP HepG2 ENCFF906QIS 225 bp overlap
ChIP IMR-5 GSE78957.RAD21.IMR-5 138 bp overlap
ChIP K-562_RF2-insertion GSE140868.RAD21.K-562_RF2-insertion 74 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 121 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 225 bp overlap
RBM22 2 datasets
ChIP HepG2 ENCFF292RVQ 435 bp overlap
ChIP HepG2 ENCFF561IAJ 435 bp overlap
RBM39 2 datasets
ChIP HepG2 ENCFF084YZE 258 bp overlap
ChIP HepG2 ENCFF801JUH 256 bp overlap
RELA 2 datasets
ChIP GM12878 ENCSR000EAG.RELA.GM12878 170 bp overlap
ChIP GM19099 ENCSR000EBI.RELA.GM19099 195 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE76181.RUNX1.Jurkat 173 bp overlap
ChIP Jurkat GSE68976.RUNX1.Jurkat 184 bp overlap
RUNX1-RUNX1T1 1 dataset
ChIP AML GSE131939.RUNX1-RUNX1T1.AML 132 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 524 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 663 bp overlap
SMARCA4 2 datasets
ChIP J-Lat_GFP-Clone-A72_DMSO GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_DMSO 94 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 159 bp overlap
SMARCA5 1 dataset
ChIP GM12878 ENCSR706YUH.SMARCA5.GM12878 306 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 169 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 387 bp overlap
STAG1 2 datasets
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 134 bp overlap
ChIP HepG2 ENCFF843EBZ 301 bp overlap
STAT3 1 dataset
ChIP breast-cancer_3487 GSE126004.STAT3.breast-cancer_3487 187 bp overlap
TARDBP 1 dataset
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 289 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 127 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 329 bp overlap
TCF3 1 dataset
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 115 bp overlap
ZBTB33 1 dataset
ChIP GM12878 ENCSR542FLV.ZBTB33.GM12878 231 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 231 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 320 bp overlap
ZNF257 1 dataset
ChIP HEK293 GSE76494.ZNF257.HEK293 151 bp overlap
ZNF263 2 datasets
ChIP HEK293 ENCFF336CWQ 478 bp overlap
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 158 bp overlap
ZNF687 1 dataset
ChIP GM12878 ENCSR859FDL.ZNF687.GM12878 324 bp overlap
Huangfu Lab · Publications · Resources · Contact