chr2 : 53,311,769 53,312,047
278 bp 78 TFs 0 linked genes
This 278 bp open chromatin element has no linked target genes and is bound by 78 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:53,306,769 – 53,317,047
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
AR 1 dataset
ChIP A-375_SLNCR GSE116189.AR.A-375_SLNCR 198 bp overlap
ATF3 2 datasets
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 191 bp overlap
ChIP HCT-116_DMSO GSE74355.ATF3.HCT-116_DMSO 157 bp overlap
BACH1 2 datasets
ChIP AsPC-1 GSE124406.BACH1.AsPC-1 246 bp overlap
ChIP SW1990 GSE124406.BACH1.SW1990 214 bp overlap
BRD2 2 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 157 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 113 bp overlap
BRD4 7 datasets
ChIP HCT-15 GSE73319.BRD4.HCT-15 257 bp overlap
ChIP SUM149PT_DMSO GSE131097.BRD4.SUM149PT_DMSO 157 bp overlap
ChIP SUM149_DMSO GSE63581.BRD4.SUM149_DMSO 166 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 114 bp overlap
ChIP SUM159PT_DMSO GSE131097.BRD4.SUM159PT_DMSO 52 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 245 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 154 bp overlap
CBX3 2 datasets
ChIP HCT-116 ENCSR000BUH.CBX3.HCT-116 219 bp overlap
ChIP HCT116 ENCFF947BOL 278 bp overlap
CDK8 1 dataset
ChIP HCT-116_NOMO GSE38258.CDK8.HCT-116_NOMO 139 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 184 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 202 bp overlap
CEBPB 2 datasets
ChIP HCT-116 ENCSR000BSD.CEBPB.HCT-116 123 bp overlap
ChIP HCT116 ENCFF097OLY 224 bp overlap
CHD2 1 dataset
ChIP HeLa-S3 ENCSR000ECP.CHD2.HeLa-S3 170 bp overlap
CREBBP 2 datasets
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 276 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 250 bp overlap
CRY2 1 dataset
ChIP U2OS GSE130602.CRY2.U2OS 195 bp overlap
DEK 1 dataset
ChIP HeLa-S3 ENCSR219MKK.DEK.HeLa-S3 136 bp overlap
EGR1 1 dataset
ChIP HCT116 ENCFF456NPQ 239 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 88 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 115 bp overlap
EP300 2 datasets
ChIP HeLa-S3 ENCFF245KNK 247 bp overlap
ChIP HeLa-S3 ENCSR680OFU.EP300.HeLa-S3 233 bp overlap
ERG 1 dataset
ChIP RWPE-1 GSE114241.ERG.RWPE-1 163 bp overlap
ESR1 2 datasets
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 189 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 209 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 226 bp overlap
FOS 3 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 254 bp overlap
ChIP HeLa-S3 ENCSR000EZE.FOS.HeLa-S3 161 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 223 bp overlap
FOSL1 3 datasets
ChIP HCT-116 ENCSR000BTE.FOSL1.HCT-116 221 bp overlap
ChIP HCT116 ENCFF540ZXN 278 bp overlap
ChIP MDA-MB-231 GSE95303.FOSL1.MDA-MB-231 192 bp overlap
FOXA1 2 datasets
ChIP PDAC GSE64557.FOXA1.PDAC 200 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 186 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 251 bp overlap
GATA6 1 dataset
ChIP OACP4-C GSE132680.GATA6.OACP4-C 278 bp overlap
HIF1A 2 datasets
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 163 bp overlap
ChIP U2OS_DMOG GSE85096.HIF1A.U2OS_DMOG 188 bp overlap
HNF4A 2 datasets
ChIP IM95 GSE114018.HNF4A.IM95 211 bp overlap
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 146 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 278 bp overlap
JUNB 2 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 217 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 137 bp overlap
JUND 4 datasets
ChIP Calu-3 GSE85401.JUND.Calu-3 120 bp overlap
ChIP HCT-116 ENCSR000BSA.JUND.HCT-116 210 bp overlap
ChIP HCT116 ENCFF748ZQX 278 bp overlap
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 178 bp overlap
KDM1A 1 dataset
ChIP keratinocyte_diff GSE57702.KDM1A.keratinocyte_diff 248 bp overlap
KDM5B 2 datasets
ChIP SUM159 GSE46055.KDM5B.SUM159 100 bp overlap
ChIP SUM185 GSE46055.KDM5B.SUM185 54 bp overlap
KLF4 2 datasets
ChIP PDAC GSE64557.KLF4.PDAC 278 bp overlap
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 228 bp overlap
KLF5 1 dataset
ChIP ESO-26 GSE132680.KLF5.ESO-26 213 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 278 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 109 bp overlap
MAFF 1 dataset
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 143 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 271 bp overlap
MAX 3 datasets
ChIP HCT-116 ENCSR000BSH.MAX.HCT-116 129 bp overlap
ChIP HCT116 ENCFF810LEN 278 bp overlap
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 173 bp overlap
MAZ 2 datasets
ChIP HeLa-S3 ENCFF212FIJ 251 bp overlap
ChIP HeLa-S3 ENCSR000ECL.MAZ.HeLa-S3 181 bp overlap
MED26 1 dataset
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 194 bp overlap
NELFE 2 datasets
ChIP HeLa GSE125534.NELFE.HeLa 137 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 216 bp overlap
NFE2L2 2 datasets
ChIP HeLa-S3 ENCFF449JDM 218 bp overlap
ChIP HeLa-S3 ENCSR707IUN.NFE2L2.HeLa-S3 174 bp overlap
NFIC 2 datasets
ChIP Ishikawa ENCFF029AAD 67 bp overlap
ChIP Ishikawa ENCFF029AAD 271 bp overlap
NR3C1 4 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 129 bp overlap
ChIP MCF-10A_DEX_60min GSE102355.NR3C1.MCF-10A_DEX_60min 187 bp overlap
ChIP MCF-10A_EGF_DEX_60min GSE102355.NR3C1.MCF-10A_EGF_DEX_60min 137 bp overlap
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 223 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 228 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 230 bp overlap
PGR 2 datasets
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 204 bp overlap
ChIP breast_tumor_Male_30 GSE104399.PGR.breast_tumor_Male_30 192 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 67 bp overlap
POLR2A 1 dataset
ChIP HCT116 ENCFF508RDJ 278 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 163 bp overlap
RAD21 2 datasets
ChIP HCT116 ENCFF568PEO 278 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 162 bp overlap
RBPJ 1 dataset
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 255 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 272 bp overlap
RUNX1 2 datasets
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 278 bp overlap
ChIP keratinocyte GSE98483.RUNX1.keratinocyte 213 bp overlap
SIN3A 1 dataset
ChIP HCT116 ENCFF203YBB 278 bp overlap
SMAD2-3 1 dataset
ChIP MCF-10A_TGFB-16h GSE83787.SMAD2-3.MCF-10A_TGFB-16h 184 bp overlap
SMAD3 7 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 249 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 278 bp overlap
ChIP HMLE_Doxycicline_TGFb GSE104760.SMAD3.HMLE_Doxycicline_TGFb 267 bp overlap
ChIP HMLE_TGFb GSE104760.SMAD3.HMLE_TGFb 203 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 165 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 278 bp overlap
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 218 bp overlap
SMARCA4 6 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 127 bp overlap
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 127 bp overlap
ChIP A-549_AG15720 GSE132290.SMARCA4.A-549_AG15720 96 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 159 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 111 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 223 bp overlap
SMC3 1 dataset
ChIP HeLa-S3 ENCSR000ECS.SMC3.HeLa-S3 132 bp overlap
SNAI2 2 datasets
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 191 bp overlap
ChIP keratinocyte_SNAI2 GSE55421.SNAI2.keratinocyte_SNAI2 238 bp overlap
SOX2 1 dataset
ChIP TT GSE46837.SOX2.TT 171 bp overlap
SP1 2 datasets
ChIP HCT-116 ENCSR000BSF.SP1.HCT-116 211 bp overlap
ChIP HCT116 ENCFF800LBN 269 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 193 bp overlap
STAG2 1 dataset
ChIP HMEC-1 GSE101921.STAG2.HMEC-1 174 bp overlap
STAT1 1 dataset
ChIP NCI-H358 GSE79707.STAT1.NCI-H358 217 bp overlap
STAT3 3 datasets
ChIP HCC1143_EtOH GSE85579.STAT3.HCC1143_EtOH 175 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 174 bp overlap
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 116 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 158 bp overlap
TCF7L2 3 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 202 bp overlap
ChIP HeLa-S3 ENCSR000EVE.TCF7L2.HeLa-S3 263 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 217 bp overlap
TP53 2 datasets
ChIP SaOS-2 GSE51268.TP53.SaOS-2 141 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 131 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 114 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 156 bp overlap
USF1 1 dataset
ChIP HCT116 ENCFF330PYP 278 bp overlap
YY1 1 dataset
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 205 bp overlap
ZBTB1 2 datasets
ChIP Jurkat_ZBTB1-KO_Asp-deprivation_cDNA GSE145783.ZBTB1.Jurkat_ZBTB1-KO_Asp-deprivation_cDNA 117 bp overlap
ChIP Jurkat_ZBTB1-KO_cDNA GSE145783.ZBTB1.Jurkat_ZBTB1-KO_cDNA 77 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 162 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 224 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 278 bp overlap