chr1 : 31,072,896 31,073,327
431 bp 72 TFs 1 linked gene
This 431 bp open chromatin element is linked to PUM1 and is bound by 72 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PUM1 7.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:31,067,896 – 31,078,327
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
72 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa_DOX_EGF GSE40632.AFF4.HeLa_DOX_EGF 58 bp overlap
AR 1 dataset
ChIP 22Rv1 GSE85558.AR.22Rv1 150 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 56 bp overlap
ARID3A 1 dataset
ChIP HepG2 ENCFF341DES 329 bp overlap
ATF3 1 dataset
ChIP liver ENCSR480LIS.ATF3.liver 188 bp overlap
ATF4 1 dataset
ChIP K562 ENCFF674KTF 53 bp overlap
BRD3 1 dataset
ChIP K-562_dilution-6-100 GSE140325.BRD3.K-562_dilution-6-100 69 bp overlap
CREB3 1 dataset
ChIP K-562 ENCSR093FKD.CREB3.K-562 360 bp overlap
CRX 2 datasets
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 335 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 418 bp overlap
DDX20 1 dataset
ChIP K-562 ENCSR446LAV.DDX20.K-562 138 bp overlap
DUX4 2 datasets
ChIP HEK293 GSE75791.DUX4.HEK293 416 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 431 bp overlap
E2F5 1 dataset
ChIP K562 ENCFF688PUB 130 bp overlap
E4F1 1 dataset
ChIP K562 ENCFF622HMZ 121 bp overlap
ELL2 1 dataset
ChIP HeLa_DOX GSE40632.ELL2.HeLa_DOX 62 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 190 bp overlap
ESR1 1 dataset
ChIP MCF-7_Veh_sc GSE117569.ESR1.MCF-7_Veh_sc 235 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 431 bp overlap
FOSL2 3 datasets
ChIP Hep-G2 ENCSR000BHP.FOSL2.Hep-G2 176 bp overlap
ChIP HepG2 ENCFF548CXY 268 bp overlap
ChIP HepG2 ENCFF796NIA 247 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 355 bp overlap
ChIP DE DE-FOXA2-1 245 bp overlap
ChIP DE DE-FOXA2-2 431 bp overlap
GATA1 2 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 145 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 151 bp overlap
GATA3 2 datasets
ChIP MCF-7 GSE133072.GATA3.MCF-7 134 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 221 bp overlap
GATA4 7 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 137 bp overlap
ChIP DE DE-GATA4-1 412 bp overlap
ChIP DE DE-GATA4-2 431 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 365 bp overlap
ChIP foregut GSE117136.GATA4.foregut 401 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 431 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 377 bp overlap
GATA6 10 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 111 bp overlap
ChIP DE DE-GATA6-1 372 bp overlap
ChIP DE DE-GATA6-2 431 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 418 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 52 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 408 bp overlap
ChIP foregut GSE117136.GATA6.foregut 397 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 309 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 380 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 289 bp overlap
GTF2E2 1 dataset
ChIP K562 ENCFF741URT 206 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 117 bp overlap
HDAC3 1 dataset
ChIP K562 ENCFF713GIR 178 bp overlap
HNF4A 13 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 195 bp overlap
ChIP HCT-116 GSE62890.HNF4A.HCT-116 170 bp overlap
ChIP Hep-G2 ENCSR000BLF.HNF4A.Hep-G2 202 bp overlap
ChIP Hep-G2 ERP000209.HNF4A.Hep-G2 201 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 195 bp overlap
ChIP HepG2 ENCFF146SSF 270 bp overlap
ChIP HepG2 ENCFF669NAM 202 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 239 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 235 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 173 bp overlap
ChIP liver ENCFF354NRH 227 bp overlap
ChIP liver ENCFF449HPV 257 bp overlap
ChIP liver ERP002306.HNF4A.liver 200 bp overlap
HNF4G 2 datasets
ChIP Hep-G2 ENCSR000BNJ.HNF4G.Hep-G2 139 bp overlap
ChIP liver ENCSR297GII.HNF4G.liver 187 bp overlap
ILF3 1 dataset
ChIP K-562 GSE103215.ILF3.K-562 275 bp overlap
JUND 1 dataset
ChIP Hep-G2 ENCSR000BGK.JUND.Hep-G2 121 bp overlap
KLF1 1 dataset
ChIP HEK293 GSE76494.KLF1.HEK293 116 bp overlap
MAX 2 datasets
ChIP MDA-MB-468 GSE81381.MAX.MDA-MB-468 127 bp overlap
ChIP MDA-MB-468 GSE81381.MAX.MDA-MB-468 171 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 207 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 243 bp overlap
NCOR1 3 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 104 bp overlap
ChIP K562 ENCFF788MPU 181 bp overlap
ChIP K562 ENCFF866HRM 155 bp overlap
NELFE 1 dataset
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 431 bp overlap
NONO 2 datasets
ChIP K-562 GSE120104.NONO.K-562 167 bp overlap
ChIP K562 ENCFF782TAA 431 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF750AXF 198 bp overlap
NR2F1 1 dataset
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 431 bp overlap
NR2F6 2 datasets
ChIP K-562 ENCSR707QWA.NR2F6.K-562 73 bp overlap
ChIP K562 ENCFF674RQA 195 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 263 bp overlap
PML 2 datasets
ChIP K-562 ENCSR000BQY.PML.K-562 193 bp overlap
ChIP K562 ENCFF801LKH 95 bp overlap
POLR2A 2 datasets
ChIP HCT116 ENCFF508RDJ 192 bp overlap
ChIP K562 ENCFF262YXJ 233 bp overlap
POLR2G 1 dataset
ChIP K562 ENCFF047BLG 269 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 147 bp overlap
PSIP1 2 datasets
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 120 bp overlap
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 188 bp overlap
RBFOX2 4 datasets
ChIP K-562 GSE120104.RBFOX2.K-562 228 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 228 bp overlap
ChIP K562 ENCFF967GRF 69 bp overlap
ChIP K562 ENCFF967GRF 169 bp overlap
RELA 1 dataset
ChIP K-562 ENCSR772EEN.RELA.K-562 431 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 419 bp overlap
SMARCA4 5 datasets
ChIP A-549_AG15724 GSE132290.SMARCA4.A-549_AG15724 66 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 425 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 316 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 186 bp overlap
ChIP K562 ENCFF506JCB 136 bp overlap
SMARCC1 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 318 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 431 bp overlap
SP1 1 dataset
ChIP liver ENCFF769YSM 344 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 284 bp overlap
SUPT5H 2 datasets
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 256 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 52 bp overlap
TAF1 1 dataset
ChIP K562 ENCFF491WAE 192 bp overlap
TAL1 1 dataset
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 151 bp overlap
THRAP3 1 dataset
ChIP K562 ENCFF445ZEJ 193 bp overlap
TP63 1 dataset
ChIP keratinocyte GSE33571.TP63.keratinocyte 134 bp overlap
WDR5 2 datasets
ChIP K-562_C6nc GSE115377.WDR5.K-562_C6nc 103 bp overlap
ChIP K-562_DMSO GSE115377.WDR5.K-562_DMSO 238 bp overlap
ZBTB18 1 dataset
ChIP HEK293 GSE76494.ZBTB18.HEK293 172 bp overlap
ZBTB48 1 dataset
ChIP HEK293 ENCFF809BPK 90 bp overlap
ZNF175 2 datasets
ChIP K562 ENCFF497AEJ 84 bp overlap
ChIP K562 ENCFF497AEJ 283 bp overlap
ZNF219 1 dataset
ChIP HepG2 ENCFF266JIR 301 bp overlap
ZNF584 1 dataset
ChIP K562 ENCFF771INO 130 bp overlap
ZNF639 1 dataset
ChIP K562 ENCFF271FQR 169 bp overlap
ZNF766 1 dataset
ChIP K562 ENCFF348LDO 253 bp overlap