chrX : 41,475,165 41,475,763
598 bp 76 TFs 1 linked gene
This 598 bp open chromatin element is linked to DDX3X and is bound by 76 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
DDX3X 141.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:41,470,165 – 41,480,763
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
ARID1A 6 datasets
ChIP HAP1 GSE108387.ARID1A.HAP1 544 bp overlap
ChIP MCF-7 GSE123284.ARID1A.MCF-7 364 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 598 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 308 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 369 bp overlap
ChIP MCF-7_JQ1 GSE123284.ARID1A.MCF-7_JQ1 496 bp overlap
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 554 bp overlap
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 170 bp overlap
ATF2 2 datasets
ChIP WA01 ENCSR000BQU.ATF2.WA01 196 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 266 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 157 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 381 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 151 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 300 bp overlap
BRD3 1 dataset
ChIP HUVEC-C GSE60171.BRD3.HUVEC-C 307 bp overlap
BRD4 7 datasets
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 328 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 160 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 405 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 367 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 186 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 159 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 190 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 561 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 581 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 228 bp overlap
CTCF 7 datasets
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 146 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 598 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 560 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 290 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 203 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 264 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 118 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 158 bp overlap
EP300 2 datasets
ChIP WA01 ENCSR000BKK.EP300.WA01 125 bp overlap
ChIP hESC GSE17917.EP300.hESC 374 bp overlap
ESR1 5 datasets
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 205 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 120 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 274 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_3 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_3 318 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 572 bp overlap
FOXA1 5 datasets
ChIP MCF-7 GSE72249.FOXA1.MCF-7 245 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 167 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 272 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 165 bp overlap
ChIP primary-breast-cancer_B1_DSG GSE114737.FOXA1.primary-breast-cancer_B1_DSG 287 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 351 bp overlap
ChIP DE DE-FOXA2-2 264 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 365 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 262 bp overlap
ChIP DE DE-GATA4-2 289 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 364 bp overlap
ChIP DE DE-GATA6-2 438 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 229 bp overlap
GRHL1 1 dataset
ChIP MCF-7_ARID1A-KO GSE140185.GRHL1.MCF-7_ARID1A-KO 206 bp overlap
GRHL2 7 datasets
ChIP HBE GSE46194.GRHL2.HBE 234 bp overlap
ChIP MCF-7 GSE109820.GRHL2.MCF-7 394 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 396 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 391 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 189 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 248 bp overlap
ChIP WTC11 ENCFF105GQI 292 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 303 bp overlap
JUN 2 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 308 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 598 bp overlap
JUND 1 dataset
ChIP GP5D_SIRAD21 GSE51234.JUND.GP5D_SIRAD21 66 bp overlap
KLF4 2 datasets
ChIP HAP1 GSE130417.KLF4.HAP1 359 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 218 bp overlap
KLF5 1 dataset
ChIP GP5D GSE51234.KLF5.GP5D 277 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 238 bp overlap
LCORL 1 dataset
ChIP HepG2 ENCFF017FTI 100 bp overlap
MAX 2 datasets
ChIP WA01 ENCSR000EUP.MAX.WA01 62 bp overlap
ChIP WTC11 ENCFF223QFY 187 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 598 bp overlap
MGA 1 dataset
ChIP HepG2 ENCFF057YJE 60 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 145 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 598 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 251 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 285 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 524 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 596 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 473 bp overlap
ChIP hESC GSE18292.NANOG.hESC 128 bp overlap
ChIP hESC GSE18292.NANOG.hESC 174 bp overlap
NIPBL 3 datasets
ChIP GP5D GSE51234.NIPBL.GP5D 133 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 242 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 249 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 102 bp overlap
NR3C1 2 datasets
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 138 bp overlap
ChIP MDA-MB-361 GSE152203.NR3C1.MDA-MB-361 152 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 149 bp overlap
POU5F1 9 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 498 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 485 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 264 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 195 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 113 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 454 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 583 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 220 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 146 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 456 bp overlap
PRPF4 1 dataset
ChIP Hep-G2 GSE120104.PRPF4.Hep-G2 169 bp overlap
RAD21 5 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 598 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 548 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 598 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 598 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 452 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 87 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 485 bp overlap
RBPJ 2 datasets
ChIP GIC GSE79734.RBPJ.GIC 335 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 598 bp overlap
RFX5 3 datasets
ChIP H1 ENCFF605EGG 259 bp overlap
ChIP MCF-7 ENCSR924TVL.RFX5.MCF-7 168 bp overlap
ChIP WA01 ENCSR000ECF.RFX5.WA01 165 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 406 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 378 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 598 bp overlap
SMAD2_3 3 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 451 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 294 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 503 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 191 bp overlap
SMARCA2 2 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 196 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 123 bp overlap
SMARCA4 10 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 276 bp overlap
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 149 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 68 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 169 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 193 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 238 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 202 bp overlap
ChIP WA09 GSE105028.SMARCA4.WA09 258 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 598 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 597 bp overlap
SMARCB1 8 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 327 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 429 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 437 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 448 bp overlap
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 241 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 466 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 435 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 362 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 406 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 598 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 395 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 336 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 598 bp overlap
SOX2 11 datasets
ChIP H9 GSE46837.SOX2.H9 349 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 598 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 441 bp overlap
ChIP NPC GSE122631.SOX2.NPC 297 bp overlap
ChIP NPC GSE122631.SOX2.NPC 236 bp overlap
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hESC GSE69479.SOX2.hESC 192 bp overlap
ChIP hESC GSE18292.SOX2.hESC 176 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 564 bp overlap
ChIP hiPSC_3s2 GSE81899.SOX2.hiPSC_3s2 290 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 212 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 598 bp overlap
SOX3 1 dataset
ChIP NPC GSE122631.SOX3.NPC 441 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 255 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 254 bp overlap
SP4 1 dataset
ChIP H1 ENCFF473YOB 155 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 286 bp overlap
STAT3 11 datasets
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 364 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 249 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 289 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 128 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 373 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 329 bp overlap
ChIP MCF-7_jc5844 GSE126004.STAT3.MCF-7_jc5844 207 bp overlap
ChIP MCF-7_jc5844 GSE126004.STAT3.MCF-7_jc5844 267 bp overlap
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 121 bp overlap
ChIP MDA-MB-361 GSE152203.STAT3.MDA-MB-361 291 bp overlap
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 153 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 196 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 214 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 507 bp overlap
TBP 1 dataset
ChIP hESC_10h GSE122298.TBP.hESC_10h 122 bp overlap
TFAP2C 3 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 182 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 119 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 125 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 280 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 197 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 228 bp overlap
ZFX 1 dataset
ChIP HepG2 ENCFF016NZF 78 bp overlap
ZFY 1 dataset
ChIP HepG2 ENCFF106ELT 82 bp overlap
ZNF143 2 datasets
ChIP MCF-7 GSE76454.ZNF143.MCF-7 173 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 123 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 598 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 112 bp overlap
ZNF579 2 datasets
ChIP MCF-7 ENCFF550XRS 108 bp overlap
ChIP MCF-7 ENCSR018MQH.ZNF579.MCF-7 82 bp overlap