chrX : 36,950,501 – 36,950,844

343 bp 128 TFs 1 linked gene

This 343 bp open chromatin element is linked to ENSG00000235510 and is bound by 128 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
ENSG00000235510		7.1 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

128 transcription factors

ALX3 1 dataset

Motif DE_12h DE_12h-ALX3_MA0634.2 6 bp overlap

AR 1 dataset

ChIP WTC11 ENCFF267GQJ 283 bp overlap

ARID1A 1 dataset

ChIP HAP1 GSE108387.ARID1A.HAP1 343 bp overlap

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 343 bp overlap

Arid3a 1 dataset

Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap

BCL11A 2 datasets

ChIP WA01 ENCSR000BIP.BCL11A.WA01 221 bp overlap

ChIP WA01 ENCSR000BMJ.BCL11A.WA01 234 bp overlap

BCOR 3 datasets

ChIP WA01 GSE104690.BCOR.WA01 339 bp overlap

ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 254 bp overlap

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 228 bp overlap

BRD4 1 dataset

ChIP HAP1 GSE108387.BRD4.HAP1 59 bp overlap

CHD7 2 datasets

ChIP H1 ENCFF126NLU 276 bp overlap

ChIP WA01 ENCSR000AVA.CHD7.WA01 327 bp overlap

CTCF 1 dataset

ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 343 bp overlap

CTNNB1 1 dataset

ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 183 bp overlap

DRGX 1 dataset

Motif DE_12h DE_12h-DRGX_MA1481.2 6 bp overlap

Dlx2 1 dataset

Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap

Dlx5 1 dataset

Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap

Dux 1 dataset

Motif ES_0h ES_0h-Dux_MA0611.3 11 bp overlap

EGR1 1 dataset

ChIP WA01 ENCSR000BJA.EGR1.WA01 207 bp overlap

EMX1 1 dataset

Motif DE_12h DE_12h-EMX1_MA0612.3 6 bp overlap

EMX2 1 dataset

Motif DE_12h DE_12h-EMX2_MA0886.2 6 bp overlap

EN1 1 dataset

Motif DE_12h DE_12h-EN1_MA0027.3 6 bp overlap

EN2 1 dataset

Motif DE_12h DE_12h-EN2_MA0642.3 7 bp overlap

EP300 3 datasets

ChIP H1 ENCFF927IYK 297 bp overlap

ChIP WA01 ENCSR000BKK.EP300.WA01 215 bp overlap

ChIP hESC GSE17917.EP300.hESC 317 bp overlap

ESX1 1 dataset

Motif DE_12h DE_12h-ESX1_MA0644.3 7 bp overlap

EVX1 1 dataset

Motif DE_12h DE_12h-EVX1_MA0887.2 6 bp overlap

EVX2 1 dataset

Motif DE_12h DE_12h-EVX2_MA0888.2 6 bp overlap

FOXE1 1 dataset

Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap

FOXK1 1 dataset

ChIP WTC11 ENCFF875IGU 314 bp overlap

FOXN3 1 dataset

Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap

FOXO1::ELF1 2 datasets

Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap

Motif ES_0h ES_0h-FOXO1ELF1_MA1953.2 13 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 253 bp overlap

GBX1 1 dataset

Motif DE_12h DE_12h-GBX1_MA0889.2 7 bp overlap

GRHL1 1 dataset

Motif DE_12h DE_12h-GRHL1_MA0647.2 10 bp overlap

GRHL2 1 dataset

Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap

GSX1 1 dataset

Motif DE_12h DE_12h-GSX1_MA0892.2 6 bp overlap

GSX2 1 dataset

Motif DE_12h DE_12h-GSX2_MA0893.3 7 bp overlap

GTF2F1 1 dataset

ChIP WA01 ENCSR000EBP.GTF2F1.WA01 132 bp overlap

HDAC2 1 dataset

ChIP WA01 ENCSR000BNR.HDAC2.WA01 149 bp overlap

HOXA1 1 dataset

Motif DE_12h DE_12h-HOXA1_MA1495.2 6 bp overlap

HOXA2 1 dataset

Motif DE_12h DE_12h-HOXA2_MA0900.3 6 bp overlap

HOXA3 1 dataset

Motif DE_12h DE_12h-HOXA3_MA2119.1 7 bp overlap

HOXA5 1 dataset

Motif DE_12h DE_12h-HOXA5_MA0158.2 8 bp overlap

HOXA6 1 dataset

Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap

HOXB1 1 dataset

Motif DE_12h DE_12h-HOXB1_MA2093.1 7 bp overlap

HOXB2 1 dataset

Motif DE_12h DE_12h-HOXB2_MA0902.3 6 bp overlap

HOXB3 1 dataset

Motif DE_12h DE_12h-HOXB3_MA0903.2 6 bp overlap

HOXB5 1 dataset

Motif DE_12h DE_12h-HOXB5_MA0904.3 6 bp overlap

HOXB6 1 dataset

Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap

HOXB7 1 dataset

Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap

HOXB8 1 dataset

Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap

HOXC8 1 dataset

Motif DE_12h DE_12h-HOXC8_MA1505.2 6 bp overlap

HOXD3 1 dataset

Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap

HOXD8 1 dataset

Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap

IRF5 1 dataset

Motif ES_0h ES_0h-IRF5_MA1420.1 14 bp overlap

ISX 1 dataset

Motif DE_12h DE_12h-ISX_MA0654.2 6 bp overlap

Irf1 1 dataset

Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap

JUN 1 dataset

ChIP ESC S34-ESC-d0-JUN-exp2 212 bp overlap

KLF4 2 datasets

ChIP HAP1 GSE130417.KLF4.HAP1 291 bp overlap

ChIP WA09 GSE105028.KLF4.WA09 323 bp overlap

LBX1 1 dataset

Motif DE_12h DE_12h-LBX1_MA0618.2 7 bp overlap

LHX5 1 dataset

Motif DE_12h DE_12h-LHX5_MA1519.2 7 bp overlap

LHX6 1 dataset

Motif DE_12h DE_12h-LHX6_MA0658.2 8 bp overlap

LHX9 1 dataset

Motif DE_12h DE_12h-LHX9_MA0701.3 7 bp overlap

LMO2 1 dataset

ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 281 bp overlap

LMX1A 1 dataset

Motif DE_12h DE_12h-LMX1A_MA0702.3 7 bp overlap

LMX1B 1 dataset

Motif DE_12h DE_12h-LMX1B_MA0703.3 8 bp overlap

Lhx1 1 dataset

Motif DE_12h DE_12h-Lhx1_MA1518.3 10 bp overlap

Lhx4 1 dataset

Motif DE_12h DE_12h-Lhx4_MA0704.2 6 bp overlap

Lhx8 1 dataset

Motif DE_12h DE_12h-Lhx8_MA0705.2 6 bp overlap

MAFF 1 dataset

Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap

MED1 1 dataset

ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 280 bp overlap

MEIS1 2 datasets

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap

MEOX1 1 dataset

Motif DE_12h DE_12h-MEOX1_MA0661.2 7 bp overlap

MEOX2 1 dataset

Motif DE_12h DE_12h-MEOX2_MA0706.2 7 bp overlap

MIXL1 1 dataset

Motif DE_12h DE_12h-MIXL1_MA0662.2 6 bp overlap

MNX1 1 dataset

Motif DE_12h DE_12h-MNX1_MA0707.3 6 bp overlap

MORC2 1 dataset

ChIP H9 GSE95374.MORC2.H9 302 bp overlap

NANOG 11 datasets

ChIP GM23338 ENCFF065NZG 145 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 343 bp overlap

ChIP H1 ENCFF747ZPQ 241 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 343 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 343 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 328 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 343 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 343 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 343 bp overlap

ChIP hESC GSE20650.NANOG.hESC 316 bp overlap

ChIP hESC GSE18292.NANOG.hESC 326 bp overlap

NFATC4 1 dataset

ChIP WTC11 ENCFF744MZI 271 bp overlap

NFIB 2 datasets

Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap

Motif ES_0h ES_0h-NFIB_MA1643.2 17 bp overlap

NIPBL 2 datasets

ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 276 bp overlap

ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 265 bp overlap

NKX6-2 1 dataset

Motif DE_12h DE_12h-NKX6-2_MA0675.2 6 bp overlap

NOTO 1 dataset

Motif DE_12h DE_12h-NOTO_MA0710.2 7 bp overlap

OTX2 1 dataset

ChIP WTC11 ENCFF634NAO 244 bp overlap

PAX4 1 dataset

Motif DE_12h DE_12h-PAX4_MA0068.2 8 bp overlap

PDX1 1 dataset

Motif DE_12h DE_12h-PDX1_MA0132.3 6 bp overlap

POLR2A 4 datasets

ChIP GM23338 ENCFF450WCS 288 bp overlap

ChIP H1 ENCFF566JSR 343 bp overlap

ChIP H1 ENCFF770YBQ 343 bp overlap

ChIP H1 ENCFF833NJP 343 bp overlap

POU5F1 12 datasets

ChIP GM23338 ENCFF333SNB 299 bp overlap

ChIP H1 ENCFF698ZAP 205 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 343 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 341 bp overlap

ChIP WA01 ENCSR000BMU.POU5F1.WA01 176 bp overlap

ChIP WA09 GSE105028.POU5F1.WA09 343 bp overlap

ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 343 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 196 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 343 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 343 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 343 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 242 bp overlap

POU6F1 1 dataset

Motif DE_12h DE_12h-POU6F1_MA0628.2 6 bp overlap

POU6F2 1 dataset

Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap

PRRX1 1 dataset

Motif DE_12h DE_12h-PRRX1_MA0716.2 6 bp overlap

PRRX2 2 datasets

Motif DE_12h DE_12h-PRRX2_MA0075.4 7 bp overlap

ChIP WTC11 ENCFF107JGJ 301 bp overlap

Pou5f1::Sox2 2 datasets

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap

Prdm4 1 dataset

Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap

RAD21 4 datasets

ChIP HAP1 GSE126634.RAD21.HAP1 343 bp overlap

ChIP HAP1 GSE152721.RAD21.HAP1 343 bp overlap

ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 343 bp overlap

ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 343 bp overlap

RARA 1 dataset

ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 210 bp overlap

RAX2 1 dataset

Motif DE_12h DE_12h-RAX2_MA0717.2 6 bp overlap

REST 1 dataset

ChIP WA01 ENCSR000BHM.REST.WA01 187 bp overlap

Runx1 2 datasets

Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap

Motif ES_0h ES_0h-Runx1_MA0002.3 9 bp overlap

SALL3 1 dataset

ChIP hiPSC GSE104863.SALL3.hiPSC 327 bp overlap

SHOX 1 dataset

Motif DE_12h DE_12h-SHOX_MA0630.2 6 bp overlap

SIN3A 1 dataset

ChIP WA01 ENCSR000BIS.SIN3A.WA01 107 bp overlap

SMARCA4 4 datasets

ChIP WA09 GSE105028.SMARCA4.WA09 343 bp overlap

ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 343 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 343 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 343 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 324 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 343 bp overlap

SMARCC1 2 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 343 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 343 bp overlap

SOX2 2 datasets

ChIP hESC GSE18292.SOX2.hESC 96 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 343 bp overlap

SP1 3 datasets

ChIP H1 ENCFF263FUH 248 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 323 bp overlap

ChIP WTC11 ENCFF688PEU 343 bp overlap

Shox2 1 dataset

Motif DE_12h DE_12h-Shox2_MA0720.2 6 bp overlap

Stat2 1 dataset

Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap

TAF7 2 datasets

ChIP H1 ENCFF061XZZ 183 bp overlap

ChIP WA01 ENCSR000BLU.TAF7.WA01 327 bp overlap

TBP 6 datasets

ChIP H1 ENCFF859IIO 226 bp overlap

ChIP WA01 ENCSR000ECB.TBP.WA01 272 bp overlap

ChIP hESC GSE122298.TBP.hESC 279 bp overlap

ChIP hESC_10h GSE122298.TBP.hESC_10h 287 bp overlap

ChIP hESC_2h GSE122298.TBP.hESC_2h 274 bp overlap

ChIP hESC_8h GSE122298.TBP.hESC_8h 255 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 218 bp overlap

TLX2 1 dataset

Motif DE_12h DE_12h-TLX2_MA1577.2 6 bp overlap

TP53 1 dataset

ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 343 bp overlap

TRIM28 3 datasets

ChIP WIBR3 GSE84382.TRIM28.WIBR3 176 bp overlap

ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 209 bp overlap

ChIP hESC GSE115387.TRIM28.hESC 192 bp overlap

UNCX 1 dataset

Motif DE_12h DE_12h-UNCX_MA0721.2 6 bp overlap

VAX1 1 dataset

Motif DE_12h DE_12h-VAX1_MA0722.2 7 bp overlap

VAX2 1 dataset

Motif DE_12h DE_12h-VAX2_MA0723.3 6 bp overlap

VSX1 1 dataset

Motif DE_12h DE_12h-VSX1_MA0725.2 7 bp overlap

VSX2 1 dataset

Motif DE_12h DE_12h-VSX2_MA0726.2 7 bp overlap

ZBTB26 2 datasets

Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap

Motif ES_0h ES_0h-ZBTB26_MA1579.2 8 bp overlap

ZMAT4 1 dataset

ChIP WTC11 ENCFF608UXZ 223 bp overlap

ZNF143 1 dataset

ChIP WA09 GSE105028.ZNF143.WA09 291 bp overlap

ZNF207 1 dataset

ChIP WA09 GSE118632.ZNF207.WA09 305 bp overlap

ZNF462 1 dataset

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 205 bp overlap

ZNF547 2 datasets

Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap

Motif ES_0h ES_0h-ZNF547_MA2334.1 13 bp overlap

ZNF582 2 datasets

Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap

Motif ES_0h ES_0h-ZNF582_MA1983.2 19 bp overlap

ZNF671 1 dataset

ChIP WTC11 ENCFF053HBV 258 bp overlap

ZNF692 1 dataset

Motif DE_12h DE_12h-ZNF692_MA1986.2 8 bp overlap

ZSCAN16 2 datasets

Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap

Motif ES_0h ES_0h-ZSCAN16_MA2100.1 18 bp overlap

Zfp335 2 datasets

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap

Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap