chr2 : 15,896,045 15,896,657
612 bp 130 TFs 0 linked genes
This 612 bp open chromatin element has no linked target genes and is bound by 130 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:15,891,045 – 15,901,657
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
130 transcription factors
Source
Cell type
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
Atf3 1 dataset
Motif DE_12h DE_12h-Atf3_MA1988.2 7 bp overlap
BACH1 1 dataset
Motif DE_12h DE_12h-BACH1_MA1633.2 9 bp overlap
BATF 1 dataset
Motif DE_12h DE_12h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_12h DE_12h-BATF3_MA0835.3 7 bp overlap
BNC2 1 dataset
Motif DE_12h DE_12h-BNC2_MA1928.2 7 bp overlap
BRD4 4 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 612 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 612 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 415 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 581 bp overlap
CDK9 1 dataset
ChIP Kelly_DMSO GSE107126.CDK9.Kelly_DMSO 179 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 352 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 256 bp overlap
CTCF 2 datasets
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 450 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 612 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 486 bp overlap
ESR1 1 dataset
ChIP endometrioid-adenocarcinoma_tumor_6 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_6 223 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 198 bp overlap
FOS 1 dataset
Motif DE_12h DE_12h-FOS_MA0476.2 8 bp overlap
FOSL1 1 dataset
Motif DE_12h DE_12h-FOSL1_MA0477.3 9 bp overlap
FOSL1::JUND 2 datasets
Motif DE_12h DE_12h-FOSL1JUND_MA1142.2 8 bp overlap
Motif DE_12h DE_12h-FOSL1JUND_MA1143.2 9 bp overlap
GATA1 1 dataset
Motif DE_12h DE_12h-GATA1_MA0035.5 7 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 523 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 546 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 526 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 580 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 540 bp overlap
Gli1 1 dataset
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
HNF1A 1 dataset
ChIP HEE_1 GSE76376.HNF1A.HEE_1 117 bp overlap
HOXA3 1 dataset
Motif DE_12h DE_12h-HOXA3_MA2119.1 7 bp overlap
HOXA4 1 dataset
Motif DE_12h DE_12h-HOXA4_MA1496.2 7 bp overlap
HOXA5 1 dataset
Motif DE_12h DE_12h-HOXA5_MA0158.2 8 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD3 1 dataset
Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Hnf1A 2 datasets
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
JDP2 1 dataset
Motif DE_12h DE_12h-JDP2_MA0655.1 9 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 410 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 446 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 487 bp overlap
JUNB 1 dataset
Motif DE_12h DE_12h-JUNB_MA0490.3 9 bp overlap
JUND 1 dataset
Motif DE_12h DE_12h-JUND_MA0491.3 9 bp overlap
Jun 1 dataset
Motif DE_12h DE_12h-Jun_MA0489.3 8 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 612 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 167 bp overlap
KLF13 1 dataset
Motif DE_12h DE_12h-KLF13_MA0657.2 17 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 612 bp overlap
Lef1 2 datasets
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 236 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 595 bp overlap
MYF6 1 dataset
Motif DE_12h DE_12h-MYF6_MA0667.1 10 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 405 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 320 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 519 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 235 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 240 bp overlap
ChIP hESC GSE18292.NANOG.hESC 99 bp overlap
NCOA2 1 dataset
ChIP MCF-7 ERP000901.NCOA2.MCF-7 195 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 272 bp overlap
NR1I3 1 dataset
Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 125 bp overlap
Nr2F6 1 dataset
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PGR 1 dataset
Motif DE_12h DE_12h-PGR_MA2327.1 9 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU2F3 2 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 399 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1 6 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 392 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 503 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 297 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 443 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 285 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 337 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 447 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
RARA 2 datasets
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
Motif DE_12h DE_12h-RARA_MA0730.1 17 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 254 bp overlap
Rarb 2 datasets
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 521 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 463 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 264 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 388 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 173 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 342 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 295 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 170 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 441 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 346 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 329 bp overlap
SNAI2 2 datasets
ChIP RD_shSNAI2 GSE137168.SNAI2.RD_shSNAI2 214 bp overlap
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 166 bp overlap
SOX14 1 dataset
Motif DE_12h DE_12h-SOX14_MA1562.2 9 bp overlap
SOX18 1 dataset
Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap
SOX2 3 datasets
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 407 bp overlap
ChIP hESC GSE18292.SOX2.hESC 98 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 247 bp overlap
SOX8 1 dataset
Motif DE_12h DE_12h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif DE_12h DE_12h-SOX9_MA0077.2 8 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Sox17 1 dataset
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 250 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 423 bp overlap
TCF7 1 dataset
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
TCF7L1 3 datasets
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 2 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Tcf21 1 dataset
Motif DE_12h DE_12h-Tcf21_MA0832.2 10 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF354A 1 dataset
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
ZNF382 1 dataset
Motif DE_12h DE_12h-ZNF382_MA1594.1 24 bp overlap
ZNF416 1 dataset
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF682 1 dataset
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF816 1 dataset
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap
ZNF85 1 dataset
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap