chr19 : 48,829,998 – 48,830,690
692 bp 55 TFs 15 linked genes
This 692 bp open chromatin element is linked to 15 target genes and is bound by 55 transcription factors.
Linked Genes
15 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
HSD17B14 5.8 kb Proximal Proximity
BCAT2 19.3 kb Distal Multiome
ENSG00000286024 23.0 kb Distal Multiome
PLEKHA4 38.3 kb Distal Multiome
PPP1R15A 42.1 kb Distal Multiome
NUCB1 70.1 kb Distal Multiome
BAX 124.6 kb Distal Multiome
FTL 135.0 kb Distal Multiome
GYS1 163.0 kb Distal Multiome
RUVBL2 163.6 kb Distal Multiome
CA11 184.1 kb Distal Multiome+HiCAR
SPHK2 211.0 kb Distal Multiome
RPL18 211.1 kb Distal Multiome
SNRNP70 255.1 kb Distal Multiome
LIN7B 284.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:48,824,998 – 48,835,690
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 275 bp overlap
ChIP K562 ENCFF938UXQ 312 bp overlap
Arid3b 1 dataset
Motif DE_48h DE_48h-Arid3b_MA0601.2 7 bp overlap
BCL11A 2 datasets
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 75 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 93 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 279 bp overlap
ChIP K562 ENCFF963TXY 214 bp overlap
CBFA2T3 3 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 389 bp overlap
ChIP K-562 GSE142227.CBFA2T3.K-562 257 bp overlap
ChIP K562 ENCFF673OEZ 353 bp overlap
CEBPB 1 dataset
ChIP K562 ENCFF194QGF 321 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 145 bp overlap
CREM 1 dataset
ChIP K-562 ENCSR077DKV.CREM.K-562 153 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 239 bp overlap
DACH1 1 dataset
ChIP K562 ENCFF574LOW 381 bp overlap
DPF2 3 datasets
ChIP K562 ENCFF739JDE 497 bp overlap
ChIP K562 ENCFF775HUO 494 bp overlap
ChIP K562 ENCFF775HUO 571 bp overlap
EGR1 2 datasets
ChIP K-562 ENCSR000BNE.EGR1.K-562 138 bp overlap
ChIP K562 ENCFF006PJY 245 bp overlap
EP300 1 dataset
ChIP K-562 ENCSR000EGE.EP300.K-562 142 bp overlap
ERF::HOXB13 1 dataset
Motif DE_72h DE_72h-ERFHOXB13_MA1937.2 13 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 195 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 432 bp overlap
ChIP DE DE-FOXA2-2 526 bp overlap
GATA1 4 datasets
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 107 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 214 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 137 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 217 bp overlap
GATA2 2 datasets
ChIP K-562 ENCSR000BKM.GATA2.K-562 186 bp overlap
ChIP K562 ENCFF544PCK 251 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 584 bp overlap
ChIP DE DE-GATA4-2 692 bp overlap
ChIP foregut GSE117136.GATA4.foregut 376 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 444 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 256 bp overlap
GATA6 13 datasets
ChIP AGS GSE51705.GATA6.AGS 168 bp overlap
ChIP DE DE-GATA6-1 632 bp overlap
ChIP DE DE-GATA6-2 664 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 664 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 472 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 472 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 692 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 483 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 526 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 341 bp overlap
ChIP foregut GSE117136.GATA6.foregut 329 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 306 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 301 bp overlap
HDAC2 1 dataset
ChIP K562 ENCFF744ALD 421 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 306 bp overlap
ChIP K562 ENCFF055GAZ 531 bp overlap
ChIP K562 ENCFF317JJX 521 bp overlap
KLF16 1 dataset
ChIP K-562 ENCSR760UVO.KLF16.K-562 182 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 342 bp overlap
LEF1 1 dataset
ChIP K562 ENCFF889WGL 361 bp overlap
MEF2B 1 dataset
Motif DE_48h DE_48h-MEF2B_MA0660.1 12 bp overlap
NCOR1 4 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 290 bp overlap
ChIP K-562 ENCSR910JAI.NCOR1.K-562 207 bp overlap
ChIP K562 ENCFF788MPU 421 bp overlap
ChIP K562 ENCFF866HRM 192 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 128 bp overlap
NR3C1 1 dataset
ChIP K-562_GLUCC ERP007081.NR3C1.K-562_GLUCC 118 bp overlap
PLAG1 1 dataset
Motif DE_48h DE_48h-PLAG1_MA0163.1 14 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 161 bp overlap
RBPJ 1 dataset
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 186 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 692 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 692 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 516 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 556 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 692 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 566 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 692 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 692 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 203 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 330 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 218 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 583 bp overlap
TAL1 10 datasets
ChIP K-562 GSE107726.TAL1.K-562 190 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 211 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 154 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 239 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 215 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 204 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 184 bp overlap
ChIP K562 ENCFF620GMX 179 bp overlap
ChIP K562 ENCFF661CCK 277 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 209 bp overlap
TCF12 2 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 215 bp overlap
ChIP K562 ENCFF931DJY 199 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 156 bp overlap
ChIP K562 ENCFF319QZT 381 bp overlap
TCF7 2 datasets
ChIP K-562 ENCSR863KUB.TCF7.K-562 218 bp overlap
ChIP K562 ENCFF372PUR 331 bp overlap
TCF7L2 1 dataset
ChIP HEK293 ENCFF513JQN 445 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 93 bp overlap
ZBTB2 1 dataset
ChIP K-562 ENCSR230PTV.ZBTB2.K-562 250 bp overlap
ZBTB33 1 dataset
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 258 bp overlap
ZBTB7A 3 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 291 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 204 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 121 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 104 bp overlap
ZNF213 1 dataset
Motif DE_48h DE_48h-ZNF213_MA2121.1 12 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 471 bp overlap
ZNF320 1 dataset
Motif DE_48h DE_48h-ZNF320_MA1976.2 20 bp overlap
ZNF418 1 dataset
Motif DE_72h DE_72h-ZNF418_MA1980.1 15 bp overlap
ZNF682 1 dataset
Motif DE_48h DE_48h-ZNF682_MA1599.2 11 bp overlap
Zfp809 1 dataset
Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap
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