GYS1
glycogen synthase 1 | GSY, GYS
GYS1 — as a Regulated Gene

TFs regulating GYS1 0 TFs

Transcription factors with Perturb-seq knockdown data for GYS1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = GYS1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to GYS1

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of GYS1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr19:48,645,454–48,647,163 346.7 kb Distal (>10kb) Multiome HiCAR 750
chr19:48,695,830–48,697,033 297.2 kb Distal (>10kb) Multiome 253
chr19:48,713,646–48,714,846 279.0 kb Distal (>10kb) Multiome 719
chr19:48,716,551–48,717,038 276.4 kb Distal (>10kb) Multiome 241
chr19:48,720,420–48,721,301 272.4 kb Distal (>10kb) Multiome 689
chr19:48,735,001–48,735,602 258.1 kb Distal (>10kb) Multiome 161
chr19:48,738,441–48,739,812 254.4 kb Distal (>10kb) Multiome 743
chr19:48,741,194–48,741,939 251.8 kb Distal (>10kb) Multiome 350
chr19:48,746,830–48,747,395 246.2 kb Distal (>10kb) Multiome 402
chr19:48,752,314–48,753,547 240.4 kb Distal (>10kb) Multiome 545
chr19:48,795,165–48,795,736 197.8 kb Distal (>10kb) Multiome 724
chr19:48,806,734–48,807,478 186.4 kb Distal (>10kb) Multiome 452
chr19:48,810,774–48,811,494 182.3 kb Distal (>10kb) Multiome 662
chr19:48,812,048–48,813,099 180.8 kb Distal (>10kb) Multiome 603
chr19:48,829,998–48,830,690 163.0 kb Distal (>10kb) Multiome 55
chr19:48,835,571–48,838,073 157.5 kb Distal (>10kb) Multiome 621
chr19:48,872,000–48,873,835 120.9 kb Distal (>10kb) Multiome 987
chr19:48,895,958–48,896,628 97.0 kb Distal (>10kb) Multiome 207
chr19:48,899,782–48,900,620 93.1 kb Distal (>10kb) Multiome 710
chr19:48,933,397–48,933,948 59.7 kb Distal (>10kb) Multiome 458
chr19:48,954,440–48,955,356 38.5 kb Distal (>10kb) Multiome 905
chr19:48,963,322–48,964,187 29.5 kb Distal (>10kb) Multiome 866
chr19:48,964,515–48,966,446 28.1 kb Distal (>10kb) Multiome 1015
chr19:48,992,286–48,992,511 798 bp At TSS 107
chr19:48,992,571–48,994,129 240 bp At TSS Multiome 852
chr19:48,999,848–49,000,018 6.5 kb Proximal (<10kb) 161
chr19:49,017,642–49,018,292 24.6 kb Distal (>10kb) Multiome 480
chr19:49,019,277–49,019,889 26.3 kb Distal (>10kb) Multiome 233
chr19:49,055,975–49,056,714 62.9 kb Distal (>10kb) Multiome 431
chr19:49,064,668–49,065,682 71.8 kb Distal (>10kb) Multiome 226
chr19:49,071,761–49,072,903 78.7 kb Distal (>10kb) Multiome 278
chr19:49,084,646–49,086,115 92.0 kb Distal (>10kb) Multiome 1030
chr19:49,113,727–49,115,240 121.7 kb Distal (>10kb) Multiome 746
chr19:49,118,477–49,120,300 125.8 kb Distal (>10kb) Multiome 949
chr19:49,127,647–49,128,949 134.9 kb Distal (>10kb) Multiome 1000
chr19:49,129,106–49,129,678 136.3 kb Distal (>10kb) Multiome 197
chr19:49,132,975–49,134,197 140.2 kb Distal (>10kb) Multiome 179
chr19:49,142,781–49,143,252 149.8 kb Distal (>10kb) Multiome 299
chr19:49,145,727–49,146,720 152.9 kb Distal (>10kb) Multiome 511
chr19:49,148,659–49,150,947 157.3 kb Distal (>10kb) Multiome 917
chr19:49,151,539–49,152,548 158.7 kb Distal (>10kb) Multiome 497
chr19:49,157,555–49,158,336 164.5 kb Distal (>10kb) Multiome 599
chr19:49,210,032–49,211,225 217.2 kb Distal (>10kb) Multiome 366

Genome Browser

Genomic view of the GYS1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr19:48,635,454 – 49,221,225
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq