chr19 : 48,825,356 – 48,825,905
549 bp 59 TFs 0 linked genes
This 549 bp open chromatin element has no linked target genes and is bound by 59 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:48,820,356 – 48,830,905
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
ADNP 3 datasets
ChIP HepG2 ENCFF096JUW 321 bp overlap
ChIP K-562 ENCSR440VKE.ADNP.K-562 381 bp overlap
ChIP K562 ENCFF492SKF 549 bp overlap
AR 12 datasets
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 287 bp overlap
ChIP LNCaP_DSG GSE114737.AR.LNCaP_DSG 177 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 149 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 230 bp overlap
ChIP MCF-7 ERP001226.AR.MCF-7 155 bp overlap
ChIP breast_tumor_Male_10 GSE104399.AR.breast_tumor_Male_10 196 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 172 bp overlap
ChIP prostate-cancer_PDX_81 GSE130408.AR.prostate-cancer_PDX_81 365 bp overlap
ChIP prostate_1730_T GSE130408.AR.prostate_1730_T 230 bp overlap
ChIP prostate_1798_T GSE130408.AR.prostate_1798_T 447 bp overlap
ChIP prostate_2815_T GSE130408.AR.prostate_2815_T 447 bp overlap
ChIP prostate_4024_T GSE130408.AR.prostate_4024_T 463 bp overlap
ARID1A 1 dataset
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 155 bp overlap
ATF3 2 datasets
ChIP liver ENCFF867MFZ 373 bp overlap
ChIP liver ENCSR205FOW.ATF3.liver 190 bp overlap
BCOR 2 datasets
ChIP K-562 ENCSR808AKZ.BCOR.K-562 433 bp overlap
ChIP K562 ENCFF343XWA 276 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_50nM GSE120715.BRD2.MV4-11_IBET151_50nM 141 bp overlap
CBX1 2 datasets
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 174 bp overlap
ChIP K-562 ENCSR948QLZ.CBX1.K-562 125 bp overlap
CEBPA 13 datasets
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 199 bp overlap
ChIP HepG2 ENCFF175DFS 305 bp overlap
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 260 bp overlap
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 232 bp overlap
ChIP MV4-11 GSE88746.CEBPA.MV4-11 202 bp overlap
ChIP SKH1_CEBPA-ER GSE102697.CEBPA.SKH1_CEBPA-ER 156 bp overlap
ChIP T-47D GSE132649.CEBPA.T-47D 338 bp overlap
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 371 bp overlap
ChIP T-47D_siCEBPA GSE132649.CEBPA.T-47D_siCEBPA 355 bp overlap
ChIP T-47D_siCtrl GSE132649.CEBPA.T-47D_siCtrl 406 bp overlap
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 127 bp overlap
ChIP THP-1_EtOH_2h GSE124032.CEBPA.THP-1_EtOH_2h 126 bp overlap
ChIP liver ERP002306.CEBPA.liver 294 bp overlap
CEBPB 25 datasets
ChIP A-549 ENCSR000BUB.CEBPB.A-549 270 bp overlap
ChIP A549 ENCFF235AIY 141 bp overlap
ChIP A549 ENCFF781RLJ 321 bp overlap
ChIP A549 ENCFF797MXZ 377 bp overlap
ChIP H1 ENCFF871PTR 261 bp overlap
ChIP HCT-116 ENCSR000BSD.CEBPB.HCT-116 166 bp overlap
ChIP HL-60_CEBPB_overexpressed GSE100486.CEBPB.HL-60_CEBPB_overexpressed 101 bp overlap
ChIP HeLa-S3 ENCFF722WEG 106 bp overlap
ChIP Hep-G2 ENCSR000BQI.CEBPB.Hep-G2 127 bp overlap
ChIP HepG2 ENCFF536NTI 86 bp overlap
ChIP IMR-90 ENCFF468UGY 148 bp overlap
ChIP Ishikawa ENCFF010USJ 261 bp overlap
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 184 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 277 bp overlap
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 236 bp overlap
ChIP K562 ENCFF189VBN 215 bp overlap
ChIP K562 ENCFF194QGF 153 bp overlap
ChIP K562 ENCFF584CTB 451 bp overlap
ChIP MCF-7 ENCFF772ZTQ 163 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 222 bp overlap
ChIP MV4-11 GSE88746.CEBPB.MV4-11 315 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 218 bp overlap
ChIP hMSC GSE68864.CEBPB.hMSC 206 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 207 bp overlap
ChIP monocyte_INFg GSE98367.CEBPB.monocyte_INFg 170 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 151 bp overlap
CEBPG 7 datasets
ChIP HepG2 ENCFF503XBC 301 bp overlap
ChIP K-562 ENCSR490LWA.CEBPG.K-562 396 bp overlap
ChIP K-562 ENCSR620VIC.CEBPG.K-562 333 bp overlap
ChIP K562 ENCFF651CMK 386 bp overlap
ChIP K562 ENCFF783ADE 496 bp overlap
ChIP K562 ENCFF956TPS 357 bp overlap
ChIP MCF-7 ENCFF155HZI 503 bp overlap
CHD4 2 datasets
ChIP A-549 ENCSR550SCU.CHD4.A-549 225 bp overlap
ChIP HepG2 ENCFF615GUT 549 bp overlap
CREB1 1 dataset
ChIP Hep-G2 ENCSR112ALD.CREB1.Hep-G2 219 bp overlap
Cebpa 20 datasets
ChIP BLaER1 ENCFF031ISE 414 bp overlap
ChIP BLaER1 ENCFF093OYK 481 bp overlap
ChIP BLaER1 ENCFF140EYR 110 bp overlap
ChIP BLaER1 ENCFF250ODG 434 bp overlap
ChIP BLaER1 ENCFF262VBH 473 bp overlap
ChIP BLaER1 ENCFF274GAT 429 bp overlap
ChIP BLaER1 ENCFF335XTP 548 bp overlap
ChIP BLaER1 ENCFF341QPD 399 bp overlap
ChIP BLaER1 ENCFF346MCV 439 bp overlap
ChIP BLaER1 ENCFF364PUR 504 bp overlap
ChIP BLaER1 ENCFF374ODN 410 bp overlap
ChIP BLaER1 ENCFF399AYC 448 bp overlap
ChIP BLaER1 ENCFF460KDD 549 bp overlap
ChIP BLaER1 ENCFF508JZF 434 bp overlap
ChIP BLaER1 ENCFF680YXW 352 bp overlap
ChIP BLaER1 ENCFF798NMV 365 bp overlap
ChIP BLaER1 ENCFF844FIP 340 bp overlap
ChIP BLaER1 ENCFF858JKM 189 bp overlap
ChIP BLaER1 ENCFF896HSY 414 bp overlap
ChIP BLaER1 ENCFF952XLX 451 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 256 bp overlap
EGR1 1 dataset
ChIP liver ENCSR736BUG.EGR1.liver 195 bp overlap
ESR1 11 datasets
ChIP MCF-7 GSE103023.ESR1.MCF-7 151 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 155 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 147 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 148 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 223 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 237 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 270 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 284 bp overlap
ChIP T-47D_siCont-IL6 GSE126004.ESR1.T-47D_siCont-IL6 215 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 265 bp overlap
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 253 bp overlap
ESR1_Y537S 2 datasets
ChIP T-47D_E2 GSE94493.ESR1_Y537S.T-47D_E2 163 bp overlap
ChIP T-47D_dox GSE94493.ESR1_Y537S.T-47D_dox 206 bp overlap
FOXA1 32 datasets
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 328 bp overlap
ChIP LNCaP_DSG GSE114737.FOXA1.LNCaP_DSG 316 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 136 bp overlap
ChIP LNCaP_S2101-48H GSE114266.FOXA1.LNCaP_S2101-48H 208 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 301 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 220 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 183 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 102 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 161 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 189 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 181 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 229 bp overlap
ChIP MCF-7_JC4694 GSE126004.FOXA1.MCF-7_JC4694 204 bp overlap
ChIP MCF-7_JC4696 GSE126004.FOXA1.MCF-7_JC4696 250 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 204 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 221 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 197 bp overlap
ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 209 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 228 bp overlap
ChIP T-47D_JC4744 GSE126004.FOXA1.T-47D_JC4744 261 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 342 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 308 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 330 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 160 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 167 bp overlap
ChIP liver ERP002306.FOXA1.liver 189 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 352 bp overlap
ChIP prostate_2030 GSE130408.FOXA1.prostate_2030 202 bp overlap
ChIP prostate_2030_T GSE130408.FOXA1.prostate_2030_T 235 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 104 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 321 bp overlap
ChIP prostate_P19_T GSE130408.FOXA1.prostate_P19_T 182 bp overlap
FOXA2 5 datasets
ChIP DE DE-FOXA2-1 549 bp overlap
ChIP DE DE-FOXA2-2 549 bp overlap
ChIP liver ENCFF888VJF 298 bp overlap
ChIP liver ENCSR310NYI.FOXA2.liver 198 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 199 bp overlap
GATA2 1 dataset
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 140 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 305 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 521 bp overlap
ChIP DE DE-GATA4-2 515 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 330 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 531 bp overlap
ChIP DE DE-GATA6-2 549 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 314 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 490 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 438 bp overlap
GRHL2 4 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 82 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 122 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 226 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 101 bp overlap
GTF2I 1 dataset
ChIP K562 ENCFF539BYI 405 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR075HTM.HDAC2.K-562 297 bp overlap
HLF 2 datasets
ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 132 bp overlap
ChIP HepG2 ENCFF854JLR 245 bp overlap
HNF4A 3 datasets
ChIP liver ENCFF354NRH 231 bp overlap
ChIP liver ENCFF449HPV 318 bp overlap
ChIP liver ERP002306.HNF4A.liver 256 bp overlap
HOXB13 6 datasets
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 80 bp overlap
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 245 bp overlap
ChIP prostate_2030 GSE130408.HOXB13.prostate_2030 194 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 171 bp overlap
ChIP prostate_P13 GSE130408.HOXB13.prostate_P13 148 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 254 bp overlap
JUND 2 datasets
ChIP liver ENCSR196HGZ.JUND.liver 175 bp overlap
ChIP liver ENCSR837GTK.JUND.liver 186 bp overlap
KDM1A 13 datasets
ChIP A-549 ENCSR639GWS.KDM1A.A-549 274 bp overlap
ChIP HepG2 ENCFF240UWG 327 bp overlap
ChIP K-562 ENCSR908CMW.KDM1A.K-562 310 bp overlap
ChIP K-562 ENCSR360HRA.KDM1A.K-562 275 bp overlap
ChIP K-562 GSE117944.KDM1A.K-562 276 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 292 bp overlap
ChIP K562 ENCFF128TYE 432 bp overlap
ChIP K562 ENCFF133OLU 432 bp overlap
ChIP K562 ENCFF934ZRG 488 bp overlap
ChIP keratinocyte_diff GSE57702.KDM1A.keratinocyte_diff 233 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 399 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 330 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 205 bp overlap
MAX 3 datasets
ChIP liver ENCFF584QGB 422 bp overlap
ChIP liver ENCSR521IID.MAX.liver 239 bp overlap
ChIP liver ENCSR847DIT.MAX.liver 225 bp overlap
NFE2 1 dataset
ChIP K-562 ENCSR000FCC.NFE2.K-562 153 bp overlap
NR2F2 1 dataset
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 52 bp overlap
PHF20 1 dataset
ChIP K562 ENCFF436SIT 377 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 271 bp overlap
ChIP K562 ENCFF248CGR 230 bp overlap
ChIP K562 ENCFF957ORK 229 bp overlap
RCOR1 3 datasets
ChIP K562 ENCFF216EEJ 297 bp overlap
ChIP K562 ENCFF721RTS 345 bp overlap
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 306 bp overlap
RXRA 2 datasets
ChIP liver ENCFF077DAP 445 bp overlap
ChIP liver ENCFF807CIA 265 bp overlap
SMAD2-3 3 datasets
ChIP HGrC1_WT GSE138496.SMAD2-3.HGrC1_WT 120 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 332 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 471 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 456 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 391 bp overlap
SMARCB1 3 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 150 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 255 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 144 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 420 bp overlap
SP1 2 datasets
ChIP liver ENCFF597LFJ 301 bp overlap
ChIP liver ENCFF769YSM 388 bp overlap
SUPT5H 1 dataset
ChIP HeLa GSE125534.SUPT5H.HeLa 125 bp overlap
TCF12 1 dataset
ChIP A-549 ENCSR000BQQ.TCF12.A-549 205 bp overlap
TEAD4 1 dataset
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 151 bp overlap
TFAP2C 1 dataset
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 151 bp overlap
TLE3 2 datasets
ChIP LNCaP GSE94682.TLE3.LNCaP 283 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 221 bp overlap
XBP1 2 datasets
ChIP LNCaP_Tg GSE121880.XBP1.LNCaP_Tg 227 bp overlap
ChIP LNCaP_px330 GSE121880.XBP1.LNCaP_px330 182 bp overlap
YY1 1 dataset
ChIP liver ENCSR994YLZ.YY1.liver 178 bp overlap
ZBTB33 3 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 255 bp overlap
ChIP K562 ENCFF427SDV 155 bp overlap
ChIP K562 ENCFF875HLX 193 bp overlap
ZHX2 1 dataset
ChIP Hep-G2 ENCSR407BEZ.ZHX2.Hep-G2 115 bp overlap
ZMYM3 5 datasets
ChIP Hep-G2 ENCSR848YWD.ZMYM3.Hep-G2 179 bp overlap
ChIP Hep-G2_AC_JH39-2-2B9 GSE97661.ZMYM3.Hep-G2_AC_JH39-2-2B9 197 bp overlap
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 332 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 308 bp overlap
ChIP K562 ENCFF361LXT 165 bp overlap
ZNF224 1 dataset
ChIP K562 ENCFF941VPS 336 bp overlap
ZNF24 1 dataset
ChIP MCF-7 ENCSR503VTG.ZNF24.MCF-7 230 bp overlap
ZNF629 2 datasets
ChIP Hep-G2 ENCSR363ASY.ZNF629.Hep-G2 308 bp overlap
ChIP HepG2 ENCFF490FFQ 139 bp overlap
ZNF664 2 datasets
ChIP HEK293 ENCFF343XSW 385 bp overlap
ChIP HEK293 ENCSR714LZQ.ZNF664.HEK293 261 bp overlap
ZNF92 1 dataset
ChIP retina_pigment GSE60024.ZNF92.retina_pigment 248 bp overlap
Huangfu Lab · Publications · Resources · Contact