chr2 : 11,713,852 11,714,367
515 bp 75 TFs 3 linked genes
This 515 bp open chromatin element is linked to LPIN1, GREB1, and E2F6 and is bound by 75 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
LPIN1 32.6 kb Distal Multiome
GREB1 231.7 kb Distal Multiome
E2F6 247.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:11,708,852 – 11,719,367
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 257 bp overlap
ChIP K562 ENCFF938UXQ 347 bp overlap
BRD3 1 dataset
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 218 bp overlap
BRD4 4 datasets
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 182 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 230 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD4.K-562_iBET-IFNG 186 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 280 bp overlap
Bcl11B 1 dataset
Motif DE_36h DE_36h-Bcl11B_MA1989.2 9 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 225 bp overlap
ChIP K562 ENCFF963TXY 300 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 359 bp overlap
ChIP K562 ENCFF673OEZ 271 bp overlap
CCNT2 2 datasets
ChIP K-562 ENCSR000DOA.CCNT2.K-562 243 bp overlap
ChIP K562 ENCFF199GSZ 299 bp overlap
CREM 1 dataset
ChIP K-562 ENCSR077DKV.CREM.K-562 160 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 306 bp overlap
ChIP K562 ENCFF403WPG 166 bp overlap
DNMT3B 1 dataset
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 217 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 297 bp overlap
EP300 1 dataset
ChIP K-562 ENCSR000EGE.EP300.K-562 186 bp overlap
ETV5 1 dataset
ChIP K562 ENCFF336FFA 357 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 90 bp overlap
GATA1 3 datasets
ChIP K-562 GSE107726.GATA1.K-562 223 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 143 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 155 bp overlap
GATA2 12 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 256 bp overlap
ChIP K-562 ENCSR257RKC.GATA2.K-562 277 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 153 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 219 bp overlap
ChIP K562 ENCFF088XQT 313 bp overlap
ChIP K562 ENCFF513FTZ 301 bp overlap
ChIP K562 ENCFF544PCK 239 bp overlap
ChIP SH-SY5Y ENCFF485YIB 275 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 231 bp overlap
ChIP SK-N-SH ENCFF764OZD 313 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 184 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 263 bp overlap
GATA3 1 dataset
ChIP Kelly GSE65664.GATA3.Kelly 165 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 361 bp overlap
ChIP DE DE-GATA4-2 385 bp overlap
ChIP foregut GSE117136.GATA4.foregut 306 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 357 bp overlap
ChIP DE DE-GATA6-2 349 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 384 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 346 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 495 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 495 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 447 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 457 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 385 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 203 bp overlap
Gfi1B 2 datasets
Motif DE_36h DE_36h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_36h DE_36h-Gfi1B_MA0483.2 10 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 358 bp overlap
ChIP K562 ENCFF968WBH 376 bp overlap
HOXB8 1 dataset
ChIP K-562 GSE121208.HOXB8.K-562 216 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 429 bp overlap
ChIP K562 ENCFF348IBL 307 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 321 bp overlap
KDM1A 5 datasets
ChIP K-562 ENCSR908CMW.KDM1A.K-562 322 bp overlap
ChIP K-562 GSE117944.KDM1A.K-562 210 bp overlap
ChIP K562 ENCFF128TYE 413 bp overlap
ChIP K562 ENCFF934ZRG 488 bp overlap
ChIP K562 ENCFF934ZRG 328 bp overlap
KLF16 1 dataset
ChIP K-562 ENCSR760UVO.KLF16.K-562 217 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 236 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MYC 1 dataset
ChIP K-562 ENCSR000EGJ.MYC.K-562 190 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 195 bp overlap
MYNN 1 dataset
ChIP K-562 ENCSR737LTZ.MYNN.K-562 126 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 235 bp overlap
NCOR1 1 dataset
ChIP K-562 ENCSR798ILC.NCOR1.K-562 252 bp overlap
PBX1 1 dataset
Motif DE_36h DE_36h-PBX1_MA0070.2 9 bp overlap
PRDM1 1 dataset
Motif DE_36h DE_36h-PRDM1_MA0508.4 7 bp overlap
PTBP1 1 dataset
ChIP K-562 GSE120104.PTBP1.K-562 228 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 351 bp overlap
ChIP K562 ENCFF248CGR 361 bp overlap
ChIP K562 ENCFF957ORK 361 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 233 bp overlap
REST 1 dataset
Motif DE_36h DE_36h-REST_MA0138.3 20 bp overlap
RFX1 5 datasets
Motif DE_36h DE_36h-RFX1_MA0509.3 16 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 224 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 185 bp overlap
ChIP K562 ENCFF421AVO 162 bp overlap
ChIP K562 ENCFF809XVG 134 bp overlap
RFX2 1 dataset
Motif DE_36h DE_36h-RFX2_MA0600.3 14 bp overlap
RFX3 1 dataset
Motif DE_36h DE_36h-RFX3_MA0798.3 16 bp overlap
RFX5 1 dataset
Motif DE_36h DE_36h-RFX5_MA0510.3 14 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 290 bp overlap
RUNX2 1 dataset
Motif DE_36h DE_36h-RUNX2_MA0511.2 9 bp overlap
Runx1 1 dataset
Motif DE_36h DE_36h-Runx1_MA0002.3 9 bp overlap
SMAD1 1 dataset
ChIP K-562 ENCSR038DJJ.SMAD1.K-562 133 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 471 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 282 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 288 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 467 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 314 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 466 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 200 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 185 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
SPI1 2 datasets
ChIP K-562 ENCSR000BGW.SPI1.K-562 132 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 168 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 187 bp overlap
TAL1 9 datasets
ChIP K-562 GSE107726.TAL1.K-562 377 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 151 bp overlap
ChIP K-562_MYO1D-Non-hub_KO GSE107726.TAL1.K-562_MYO1D-Non-hub_KO 170 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 196 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 187 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 233 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 205 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 175 bp overlap
ChIP K562 ENCFF620GMX 225 bp overlap
TCF12 2 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 261 bp overlap
ChIP K562 ENCFF931DJY 336 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 309 bp overlap
ChIP K562 ENCFF319QZT 138 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 256 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 91 bp overlap
Tbx6 1 dataset
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 168 bp overlap
ZFP36 2 datasets
ChIP K-562 ENCSR776CYN.ZFP36.K-562 387 bp overlap
ChIP K562 ENCFF255RZG 139 bp overlap
ZMYM3 3 datasets
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 332 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 249 bp overlap
ChIP K562 ENCFF361LXT 381 bp overlap
ZNF16 1 dataset
Motif DE_36h DE_36h-ZNF16_MA1654.2 21 bp overlap
ZNF317 1 dataset
Motif DE_36h DE_36h-ZNF317_MA1593.2 8 bp overlap
ZNF582 1 dataset
Motif DE_36h DE_36h-ZNF582_MA1983.2 19 bp overlap
ZNF768 1 dataset
Motif DE_36h DE_36h-ZNF768_MA1731.2 9 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 294 bp overlap