chr19 : 30,690,979 – 30,691,696

717 bp 98 TFs 0 linked genes

This 717 bp open chromatin element has no linked target genes and is bound by 98 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

98 transcription factors

ARID1A 1 dataset

ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 305 bp overlap

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 465 bp overlap

ATF4 1 dataset

Motif DE_24h DE_24h-ATF4_MA0833.3 10 bp overlap

Ahr::Arnt 1 dataset

Motif DE_24h DE_24h-AhrArnt_MA0006.2 5 bp overlap

Atoh1 1 dataset

Motif DE_24h DE_24h-Atoh1_MA1467.3 7 bp overlap

BCOR 2 datasets

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 431 bp overlap

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 538 bp overlap

BRD4 3 datasets

ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 172 bp overlap

ChIP hESC GSE33281.BRD4.hESC 103 bp overlap

ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 273 bp overlap

CDK8 1 dataset

ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 77 bp overlap

CEBPG 1 dataset

Motif DE_24h DE_24h-CEBPG_MA1636.2 10 bp overlap

CHD2 2 datasets

ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 136 bp overlap

ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 91 bp overlap

CREB1 1 dataset

ChIP A-549 ENCSR000BRA.CREB1.A-549 128 bp overlap

CREBBP 1 dataset

ChIP MCF-7 ERP000901.CREBBP.MCF-7 266 bp overlap

CTCF 1 dataset

ChIP brain ENCFF685VRG 64 bp overlap

CTNNB1 1 dataset

ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 416 bp overlap

DUXA 1 dataset

Motif DE_24h DE_24h-DUXA_MA0884.2 13 bp overlap

E2F6 3 datasets

Motif DE_24h DE_24h-E2F6_MA0471.3 8 bp overlap

ChIP H1 ENCFF785DWK 451 bp overlap

ChIP WA01 ENCSR000BSI.E2F6.WA01 146 bp overlap

EP300 1 dataset

ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 224 bp overlap

ERF::FOXI1 1 dataset

Motif DE_24h DE_24h-ERFFOXI1_MA1935.2 10 bp overlap

ESR1 2 datasets

ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 265 bp overlap

ChIP T-47D GSE148277.ESR1.T-47D 277 bp overlap

ETV1 3 datasets

Motif DE_24h DE_24h-ETV1_MA0761.3 9 bp overlap

ChIP GIST-T1 GSE106624.ETV1.GIST-T1 242 bp overlap

ChIP GIST-T1 GSE80443.ETV1.GIST-T1 147 bp overlap

ETV2::FOXI1 1 dataset

Motif DE_24h DE_24h-ETV2FOXI1_MA1942.2 11 bp overlap

EZH2 4 datasets

ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 716 bp overlap

ChIP PC-9 ENCFF152BST 388 bp overlap

ChIP PC-9 ENCSR793USK.EZH2.PC-9 717 bp overlap

ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 482 bp overlap

Erg 1 dataset

Motif DE_24h DE_24h-Erg_MA0474.4 10 bp overlap

FLI1::FOXI1 1 dataset

Motif DE_24h DE_24h-FLI1FOXI1_MA1950.2 11 bp overlap

FOXA2 1 dataset

ChIP DE DE-FOXA2-1 506 bp overlap

FOXH1 1 dataset

Motif DE_24h DE_24h-FOXH1_MA0479.2 8 bp overlap

FOXJ2::ELF1 1 dataset

Motif DE_24h DE_24h-FOXJ2ELF1_MA1952.2 11 bp overlap

GABPA 1 dataset

Motif DE_24h DE_24h-GABPA_MA0062.4 10 bp overlap

GATA2 2 datasets

ChIP SH-SY5Y ENCFF485YIB 345 bp overlap

ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 317 bp overlap

GATA4 3 datasets

ChIP DE DE-GATA4-2 717 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 458 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 319 bp overlap

GATA6 7 datasets

ChIP DE DE-GATA6-2 717 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 559 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 532 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 661 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 285 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 679 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 668 bp overlap

GLIS1 1 dataset

Motif DE_24h DE_24h-GLIS1_MA0735.2 15 bp overlap

GLIS2 1 dataset

Motif DE_24h DE_24h-GLIS2_MA0736.1 14 bp overlap

GLIS3 2 datasets

Motif DE_24h DE_24h-GLIS3_MA0737.1 14 bp overlap

ChIP H9_plus GSE109562.GLIS3.H9_plus 421 bp overlap

GRHL2 3 datasets

ChIP MCF-7 GSE109820.GRHL2.MCF-7 161 bp overlap

ChIP MCF-7 GSE109820.GRHL2.MCF-7 172 bp overlap

ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 505 bp overlap

HAND2 1 dataset

Motif DE_24h DE_24h-HAND2_MA1638.2 6 bp overlap

HNRNPH1 1 dataset

ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 154 bp overlap

Hnf1A 1 dataset

Motif DE_24h DE_24h-Hnf1A_MA1991.2 10 bp overlap

IKZF1 1 dataset

Motif DE_24h DE_24h-IKZF1_MA1508.2 8 bp overlap

IKZF2 1 dataset

Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap

Ikzf3 1 dataset

Motif DE_24h DE_24h-Ikzf3_MA1992.2 9 bp overlap

JUN 4 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 553 bp overlap

ChIP DE_D1 S13-DE-d1-JUN-exp1 323 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 581 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 717 bp overlap

KDM1A 1 dataset

ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 226 bp overlap

KLF14 1 dataset

Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap

KLF6 1 dataset

Motif DE_24h DE_24h-KLF6_MA1517.2 9 bp overlap

Lef1 1 dataset

Motif DE_24h DE_24h-Lef1_MA0768.3 8 bp overlap

MED12 1 dataset

ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 59 bp overlap

MEF2B 1 dataset

Motif DE_24h DE_24h-MEF2B_MA0660.1 12 bp overlap

MEF2D 1 dataset

Motif DE_24h DE_24h-MEF2D_MA0773.1 12 bp overlap

MEIS1 1 dataset

Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap

MXI1 2 datasets

ChIP SK-N-SH ENCFF746HVJ 467 bp overlap

ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 179 bp overlap

MYB 1 dataset

Motif DE_24h DE_24h-MYB_MA0100.4 6 bp overlap

NANOG 3 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 242 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 289 bp overlap

ChIP hESC GSE18292.NANOG.hESC 68 bp overlap

NEUROD1 2 datasets

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 76 bp overlap

Motif DE_24h DE_24h-NEUROD1_MA1109.2 8 bp overlap

NEUROG2 1 dataset

Motif DE_24h DE_24h-NEUROG2_MA1642.2 7 bp overlap

Neurod2 1 dataset

Motif DE_24h DE_24h-Neurod2_MA0668.3 8 bp overlap

Nr2e1 1 dataset

Motif DE_24h DE_24h-Nr2e1_MA0676.1 9 bp overlap

PHOX2A 1 dataset

Motif DE_24h DE_24h-PHOX2A_MA0713.1 11 bp overlap

PHOX2B 1 dataset

Motif DE_24h DE_24h-PHOX2B_MA0681.3 12 bp overlap

PITX3 1 dataset

ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 717 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_24h DE_24h-POU2F1SOX2_MA1962.1 17 bp overlap

POU5F1 3 datasets

ChIP BG03 GSE21614.POU5F1.BG03 209 bp overlap

ChIP DE_D1 DED1-OCT4_Batch_II 486 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 299 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 454 bp overlap

PROP1 1 dataset

Motif DE_24h DE_24h-PROP1_MA0715.1 11 bp overlap

Pax7 1 dataset

Motif DE_24h DE_24h-Pax7_MA0680.3 10 bp overlap

RBPJ 1 dataset

Motif DE_24h DE_24h-RBPJ_MA1116.2 6 bp overlap

RCOR1 1 dataset

ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 310 bp overlap

RNF2 1 dataset

ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 61 bp overlap

RREB1 1 dataset

Motif DE_24h DE_24h-RREB1_MA0073.2 19 bp overlap

SMAD2 3 datasets

Motif DE_24h DE_24h-SMAD2_MA1964.2 6 bp overlap

ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 655 bp overlap

ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 512 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 704 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 709 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 717 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 717 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 493 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 503 bp overlap

SMAD3 1 dataset

ChIP hESC GSE29422.SMAD3.hESC 162 bp overlap

SMARCA4 6 datasets

ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 610 bp overlap

ChIP MCF-7 GSE140185.SMARCA4.MCF-7 266 bp overlap

ChIP NGP GSE134626.SMARCA4.NGP 169 bp overlap

ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 437 bp overlap

ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 201 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 574 bp overlap

SMARCB1 2 datasets

ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 254 bp overlap

ChIP hiPSC GSE124903.SMARCB1.hiPSC 493 bp overlap

SMARCC1 7 datasets

ChIP DE_D1 S10-DE-d1-BAF155-exp1 415 bp overlap

ChIP DE_D1 S15-DE-d1-BAF155-exp1 151 bp overlap

ChIP DE_D1 S15-DE-d1-BAF155-exp1 508 bp overlap

ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 302 bp overlap

ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 349 bp overlap

ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 313 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 445 bp overlap

SNAI2 2 datasets

ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 346 bp overlap

ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 256 bp overlap

SS18 2 datasets

ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 387 bp overlap

ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 128 bp overlap

SUZ12 2 datasets

ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 292 bp overlap

ChIP K-562 ENCSR000AUC.SUZ12.K-562 272 bp overlap

T 1 dataset

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 258 bp overlap

TCF4 1 dataset

ChIP SK-N-SH ENCFF270OWF 183 bp overlap

TCF7 1 dataset

Motif DE_24h DE_24h-TCF7_MA0769.3 7 bp overlap

TCF7L1 1 dataset

Motif DE_24h DE_24h-TCF7L1_MA1421.1 12 bp overlap

TCF7L2 2 datasets

Motif DE_24h DE_24h-TCF7L2_MA0523.2 9 bp overlap

ChIP HCT-116_WT GSE127960.TCF7L2.HCT-116_WT 223 bp overlap

TEAD1 1 dataset

Motif DE_24h DE_24h-TEAD1_MA0090.4 9 bp overlap

TEAD2 1 dataset

Motif DE_24h DE_24h-TEAD2_MA1121.2 7 bp overlap

TEAD3 1 dataset

Motif DE_24h DE_24h-TEAD3_MA0808.1 8 bp overlap

TEAD4 1 dataset

Motif DE_24h DE_24h-TEAD4_MA0809.3 8 bp overlap

TP53 3 datasets

ChIP H9 GSE142050.TP53.H9 717 bp overlap

ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 348 bp overlap

ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 634 bp overlap

TWIST1 3 datasets

ChIP BE2C GSE80151.TWIST1.BE2C 152 bp overlap

Motif DE_24h DE_24h-TWIST1_MA1123.3 8 bp overlap

ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 152 bp overlap

Tbx6 1 dataset

Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap

Tfcp2l1 1 dataset

Motif DE_24h DE_24h-Tfcp2l1_MA0145.2 14 bp overlap

ZBTB26 1 dataset

Motif DE_24h DE_24h-ZBTB26_MA1579.2 8 bp overlap

ZNF175 1 dataset

Motif DE_24h DE_24h-ZNF175_MA2332.1 9 bp overlap

ZNF189 1 dataset

Motif DE_24h DE_24h-ZNF189_MA1725.2 9 bp overlap

ZNF416 1 dataset

Motif DE_24h DE_24h-ZNF416_MA1979.2 10 bp overlap

ZNF75A 1 dataset

Motif DE_24h DE_24h-ZNF75A_MA2097.1 12 bp overlap

Zfp809 1 dataset

Motif DE_24h DE_24h-Zfp809_MA2125.1 9 bp overlap