chr2 : 6,073,645 – 6,074,025
380 bp 68 TFs 0 linked genes
This 380 bp open chromatin element has no linked target genes and is bound by 68 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:6,068,645 – 6,079,025
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 356 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 305 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 131 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 380 bp overlap
BRD2 2 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 380 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 173 bp overlap
BRD4 16 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 274 bp overlap
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.BRD4.Hs-352-Sk_PAX3-FOXO1-vector 308 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 345 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 186 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 380 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 197 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 380 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 189 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 380 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 285 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 380 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 194 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 346 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 380 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 380 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 376 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 199 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 173 bp overlap
CEBPB 1 dataset
ChIP IMR-90 ENCFF468UGY 159 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 219 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 380 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 380 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 380 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 380 bp overlap
CTCF 34 datasets
ChIP D54 ENCSR000DKN.CTCF.D54 132 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 154 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 166 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 132 bp overlap
ChIP SK-N-SH ENCFF731NJX 251 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 181 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 92 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 156 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 193 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 101 bp overlap
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 168 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 375 bp overlap
ChIP chondrocyte ENCFF134ORZ 380 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 217 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 169 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 151 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 224 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 368 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF257LSY 291 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF267VHH 319 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 360 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF282ONV 315 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF377YBQ 380 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 221 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696ASB 339 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF733NZH 301 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF748IBN 334 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF835ZSJ 340 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 119 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 252 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 285 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 276 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 180 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 157 bp overlap
EBF3_P177L 1 dataset
ChIP SK-N-SH GSE90682.EBF3_P177L.SK-N-SH 364 bp overlap
EP300 4 datasets
ChIP SK-N-SH ENCFF829RWA 154 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 380 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 373 bp overlap
ChIP neural cell ENCFF442QNK 269 bp overlap
ESRRG 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR023KKB.ESRRG.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 380 bp overlap
EZH2 2 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 304 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 169 bp overlap
FOS 2 datasets
ChIP IMR-90 ENCFF179EDA 215 bp overlap
ChIP IMR-90 ENCSR124AIG.FOS.IMR-90 148 bp overlap
FOSL2 1 dataset
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 168 bp overlap
FOXA1 1 dataset
ChIP MCF-7_E2 GSE59530.FOXA1.MCF-7_E2 61 bp overlap
FOXJ3 2 datasets
ChIP SK-N-SH ENCFF124KVL 143 bp overlap
ChIP SK-N-SH ENCFF124KVL 356 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 204 bp overlap
GATA2 6 datasets
ChIP SH-SY5Y ENCFF485YIB 67 bp overlap
ChIP SH-SY5Y ENCFF485YIB 266 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 380 bp overlap
ChIP SK-N-SH ENCFF764OZD 241 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 259 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 182 bp overlap
GATA3 5 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 170 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 285 bp overlap
ChIP SH-SY5Y ENCFF475HYF 70 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 74 bp overlap
ChIP SK-N-SH ENCFF040SSB 84 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 322 bp overlap
GATA6 6 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 207 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 249 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 359 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 380 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 312 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 231 bp overlap
GLIS3 2 datasets
ChIP SK-N-SH ENCFF370MHZ 194 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR507BWM.GLIS3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 380 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 380 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 353 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 367 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 298 bp overlap
JUN 2 datasets
ChIP HUES-8 GSE109524.JUN.HUES-8 116 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 192 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B0_SHLSD18A GSE58258.KDM1A.SH-SY5Y_B0_SHLSD18A 203 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 192 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 123 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 380 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 380 bp overlap
MXI1 1 dataset
ChIP neural cell ENCFF623HQN 157 bp overlap
MYCN 4 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 380 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 332 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 380 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 376 bp overlap
PAX3-FOXO1 1 dataset
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 194 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 238 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 334 bp overlap
POLR2A 1 dataset
ChIP SK-N-SH ENCFF683PFH 229 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 314 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 349 bp overlap
RAD21 3 datasets
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 380 bp overlap
ChIP neural cell ENCFF564MOT 269 bp overlap
ChIP neuroblastoma GSE115862.RAD21.neuroblastoma 158 bp overlap
RARA 2 datasets
ChIP SK-N-SH GSE69119.RARA.SK-N-SH 304 bp overlap
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 311 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 131 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 380 bp overlap
REST 2 datasets
ChIP neural cell ENCFF882LXX 168 bp overlap
ChIP neural cell ENCFF882LXX 355 bp overlap
RUVBL2 2 datasets
ChIP U2OS GSE130602.RUVBL2.U2OS 213 bp overlap
ChIP U2OS_cordycepin GSE130507.RUVBL2.U2OS_cordycepin 133 bp overlap
SIX2 1 dataset
ChIP HEK GSE73865.SIX2.HEK 115 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 169 bp overlap
SMARCA4 7 datasets
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 161 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 328 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 347 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 256 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 365 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 277 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 380 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 321 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 380 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 191 bp overlap
SMC3 1 dataset
ChIP neural cell ENCFF795YGY 189 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH ENCFF449PID 249 bp overlap
SOX2 4 datasets
ChIP hiPSC GSE67282.SOX2.hiPSC 223 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 211 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 229 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
TAF1 3 datasets
ChIP WA01 ENCSR000BHO.TAF1.WA01 139 bp overlap
ChIP neural ENCSR000BTX.TAF1.neural 97 bp overlap
ChIP neural ENCSR000BTX.TAF1.neural 207 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 323 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 278 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 305 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 380 bp overlap
TEAD4 1 dataset
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 129 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 380 bp overlap
TOX2 2 datasets
ChIP SK-N-SH ENCFF415OYE 103 bp overlap
ChIP SK-N-SH ENCFF415OYE 282 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 204 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH ENCFF182EBB 310 bp overlap
YY1 3 datasets
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 103 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 380 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 285 bp overlap
ZNF70 1 dataset
ChIP SK-N-SH ENCFF833ACX 287 bp overlap
ZNF8 1 dataset
ChIP SK-N-SH ENCFF131SMT 306 bp overlap
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