chr15 : 47,777,992 – 47,778,863
871 bp 100 TFs 1 linked gene
This 871 bp open chromatin element is linked to SEMA6D and is bound by 100 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SEMA6D 594.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:47,772,992 – 47,783,863
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
100 transcription factors
Source
Cell type
AR 39 datasets
ChIP 22Rv1_R1881 GSE80742.AR.22Rv1_R1881 72 bp overlap
ChIP DUCAP_ANDROGEN GSE70679.AR.DUCAP_ANDROGEN 170 bp overlap
ChIP LNCaP GSE85558.AR.LNCaP 59 bp overlap
ChIP LNCaP GSE117430.AR.LNCaP 205 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 165 bp overlap
ChIP LNCaP_Bag1L_KO_Bag1L_Rescue_DHT_4h GSE89938.AR.LNCaP_Bag1L_KO_Bag1L_Rescue_DHT_4h 222 bp overlap
ChIP LNCaP_DHT GSE125245.AR.LNCaP_DHT 65 bp overlap
ChIP LNCaP_DHT GSE114266.AR.LNCaP_DHT 142 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 171 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 165 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-Y GSE114732.AR.LNCaP_androgen-Y_hypoxia-Y 57 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 251 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 260 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 254 bp overlap
ChIP VCaP GSE83650.AR.VCaP 78 bp overlap
ChIP VCaP GSE98809.AR.VCaP 78 bp overlap
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 240 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 289 bp overlap
ChIP VCaP_DHT GSE79128.AR.VCaP_DHT 177 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 184 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 257 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 376 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 156 bp overlap
ChIP VCaP_DHTTHZ1 GSE125245.AR.VCaP_DHTTHZ1 74 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 182 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 194 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 185 bp overlap
ChIP VCaP_SH1_DHT GSE79128.AR.VCaP_SH1_DHT 214 bp overlap
ChIP VCaP_SH1_R1881 GSE79128.AR.VCaP_SH1_R1881 178 bp overlap
ChIP VCaP_SH2_DHT GSE79128.AR.VCaP_SH2_DHT 170 bp overlap
ChIP VCaP_SH2_R1881 GSE79128.AR.VCaP_SH2_R1881 118 bp overlap
ChIP VCaP_SH3_DHT GSE79128.AR.VCaP_SH3_DHT 184 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 149 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.AR.primary-prostate-cancer_P2_DSG 142 bp overlap
ChIP prostate GSE56288.AR.prostate 71 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 195 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.AR.prostate-cancer_PDX_70 153 bp overlap
ChIP prostate-cancer_PDX_81 GSE130408.AR.prostate-cancer_PDX_81 173 bp overlap
ChIP prostate_DHT GSE61838.AR.prostate_DHT 99 bp overlap
ARID1A 2 datasets
ChIP HAP1 GSE108387.ARID1A.HAP1 308 bp overlap
ChIP LNCaP_r1881 GSE94682.ARID1A.LNCaP_r1881 101 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 339 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 338 bp overlap
BRD4 1 dataset
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 112 bp overlap
CEBPB 1 dataset
ChIP HeLa-S3 ENCFF722WEG 265 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 213 bp overlap
CLOCK 1 dataset
ChIP BA40_3 GSE96659.CLOCK.BA40_3 150 bp overlap
CREB1 2 datasets
ChIP Hep-G2 ENCSR112ALD.CREB1.Hep-G2 87 bp overlap
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 136 bp overlap
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 245 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 516 bp overlap
Crx 1 dataset
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
Dmbx1 1 dataset
Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 366 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 347 bp overlap
EP300 1 dataset
ChIP hESC GSE17917.EP300.hESC 493 bp overlap
ERG 2 datasets
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 148 bp overlap
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 188 bp overlap
FIGLA 1 dataset
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOS 1 dataset
ChIP HeLa-S3 ENCSR000EZE.FOS.HeLa-S3 125 bp overlap
FOXA1 2 datasets
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 146 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 102 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_GATA4 GSE90454.FOXA2.BJ1-hTERT_GATA4 192 bp overlap
ChIP DE DE-FOXA2-1 701 bp overlap
ChIP DE DE-FOXA2-2 709 bp overlap
FOXE1 1 dataset
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
GABPA 1 dataset
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 115 bp overlap
GATA2 1 dataset
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
GATA4 7 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 243 bp overlap
ChIP DE DE-GATA4-1 667 bp overlap
ChIP DE DE-GATA4-2 831 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 302 bp overlap
ChIP foregut GSE117136.GATA4.foregut 421 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 800 bp overlap
GATA5 1 dataset
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 704 bp overlap
ChIP DE DE-GATA6-2 772 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 515 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 721 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 627 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 621 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 777 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 639 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 628 bp overlap
ChIP foregut GSE117136.GATA6.foregut 490 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 482 bp overlap
GSC 1 dataset
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
Gata3 1 dataset
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HDAC2 3 datasets
ChIP WA01 ENCSR000BNR.HDAC2.WA01 228 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap
ChIP pre-B-cell GSE107886.HDAC2.pre-B-cell 208 bp overlap
HNF4G 1 dataset
ChIP 22Rv1 GSE85558.HNF4G.22Rv1 83 bp overlap
HOXD11 1 dataset
Motif DE_60h DE_60h-HOXD11_MA0908.2 9 bp overlap
Hand1::Tcf3 1 dataset
Motif DE_60h DE_60h-Hand1Tcf3_MA0092.2 9 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 198 bp overlap
IRF2 1 dataset
Motif DE_60h DE_60h-IRF2_MA0051.2 16 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 639 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 273 bp overlap
JUND 1 dataset
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 153 bp overlap
MED1 1 dataset
ChIP VCaP_DHTTHZ1 GSE125245.MED1.VCaP_DHTTHZ1 56 bp overlap
MGA::EVX1 1 dataset
Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap
MYB 1 dataset
Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 806 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 175 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 409 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 456 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 238 bp overlap
ChIP hESC GSE18292.NANOG.hESC 291 bp overlap
NFIB 3 datasets
ChIP MCF-7 ENCFF925CGH 334 bp overlap
ChIP MCF-7 ENCSR702BYX.NFIB.MCF-7 227 bp overlap
ChIP MCF-7 ENCSR582ZOA.NFIB.MCF-7 250 bp overlap
NR3C1 5 datasets
ChIP LNCaP_1F5 GSE30623.NR3C1.LNCaP_1F5 52 bp overlap
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 167 bp overlap
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 275 bp overlap
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 88 bp overlap
ChIP U2OS_SHNS GSE65847.NR3C1.U2OS_SHNS 140 bp overlap
Nanog 1 dataset
Motif DE_60h DE_60h-Nanog_MA2339.1 7 bp overlap
OSR2 1 dataset
Motif DE_60h DE_60h-OSR2_MA1646.2 8 bp overlap
OTX1 1 dataset
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
ChIP retina_pigment GSE60024.OTX2.retina_pigment 207 bp overlap
PGR 1 dataset
ChIP AB32 GSE31129.PGR.AB32 175 bp overlap
PITX1 1 dataset
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
POU1F1 2 datasets
Motif DE_60h DE_60h-POU1F1_MA0784.3 14 bp overlap
Motif DE_60h DE_60h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_60h DE_60h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 1 dataset
Motif DE_60h DE_60h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 2 datasets
Motif DE_60h DE_60h-POU2F2_MA0507.3 13 bp overlap
Motif DE_60h DE_60h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif DE_60h DE_60h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif DE_60h DE_60h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_60h DE_60h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_60h DE_60h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_60h DE_60h-POU3F4_MA0789.1 9 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 634 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 329 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 366 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 206 bp overlap
POU5F1B 1 dataset
Motif DE_60h DE_60h-POU5F1B_MA0792.1 9 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 227 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_60h DE_60h-Pou5f1Sox2_MA0142.1 15 bp overlap
Prdm15 1 dataset
Motif DE_60h DE_60h-Prdm15_MA1616.2 11 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 628 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 67 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 338 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 558 bp overlap
RHOXF1 1 dataset
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
RUNX1 2 datasets
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 356 bp overlap
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 317 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 252 bp overlap
SATB1 1 dataset
Motif DE_60h DE_60h-SATB1_MA1963.2 7 bp overlap
SCRT1 1 dataset
Motif DE_60h DE_60h-SCRT1_MA0743.3 10 bp overlap
SIX1 1 dataset
Motif DE_60h DE_60h-SIX1_MA1118.2 9 bp overlap
SIX2 1 dataset
Motif DE_60h DE_60h-SIX2_MA1119.2 11 bp overlap
SMAD2 2 datasets
Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 149 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 849 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 544 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 372 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 366 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 336 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 741 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 726 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 265 bp overlap
SMAD3 4 datasets
ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 224 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 219 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 236 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 192 bp overlap
SMARCA4 3 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 462 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 371 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 383 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 213 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 332 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 459 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 233 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 327 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 298 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 177 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 325 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 160 bp overlap
Six4 1 dataset
Motif DE_60h DE_60h-Six4_MA2001.2 7 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 292 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 367 bp overlap
THRB 1 dataset
Motif DE_60h DE_60h-THRB_MA1575.2 17 bp overlap
TRPS1 1 dataset
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
USF1 2 datasets
Motif DE_60h DE_60h-USF1_MA0093.4 10 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 163 bp overlap
ZBTB44 1 dataset
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 206 bp overlap
ZEB1 1 dataset
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZIM3 2 datasets
Motif DE_48h DE_48h-ZIM3_MA1709.2 11 bp overlap
Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 396 bp overlap
ZNF211 1 dataset
Motif DE_60h DE_60h-ZNF211_MA1974.2 10 bp overlap
ZNF300 1 dataset
ChIP HEK293T GSE78099.ZNF300.HEK293T 142 bp overlap
ZNF384 1 dataset
Motif DE_60h DE_60h-ZNF384_MA1125.2 8 bp overlap
ZNF675 2 datasets
Motif DE_48h DE_48h-ZNF675_MA1714.2 19 bp overlap
Motif DE_60h DE_60h-ZNF675_MA1714.2 19 bp overlap
ZNF766 1 dataset
Motif DE_60h DE_60h-ZNF766_MA2098.1 9 bp overlap
ZSCAN5C 1 dataset
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 273 bp overlap
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