chr1 : 231,929,346 231,929,606
260 bp 75 TFs 0 linked genes
This 260 bp open chromatin element has no linked target genes and is bound by 75 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:231,924,346 – 231,934,606
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 260 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 240 bp overlap
BRD2 3 datasets
ChIP SUM159PT_DMSO GSE116879.BRD2.SUM159PT_DMSO 181 bp overlap
ChIP SUM159PT_JQ1_MGSK2801 GSE116879.BRD2.SUM159PT_JQ1_MGSK2801 185 bp overlap
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 188 bp overlap
BRD4 23 datasets
ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 260 bp overlap
ChIP HUVEC-C GSE53998.BRD4.HUVEC-C 232 bp overlap
ChIP HUVEC-C_TNF GSE53998.BRD4.HUVEC-C_TNF 260 bp overlap
ChIP HUVEC-C_TNF_JQ1 GSE53998.BRD4.HUVEC-C_TNF_JQ1 238 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 179 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 181 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 260 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 254 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 251 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 260 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 157 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 260 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 260 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 260 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 260 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 260 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 260 bp overlap
ChIP SUM229PE_pos_DMSO_24h GSE87418.BRD4.SUM229PE_pos_DMSO_24h 242 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 171 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 229 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 260 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 126 bp overlap
ChIP thyroid-cancer GSE114068.BRD4.thyroid-cancer 190 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 260 bp overlap
CTCF 1 dataset
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 203 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 260 bp overlap
ChIP neural cell ENCFF442QNK 260 bp overlap
ERG 4 datasets
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 205 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 97 bp overlap
ChIP aortic-endothelial-cell_D40 GSE139377.ERG.aortic-endothelial-cell_D40 150 bp overlap
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 81 bp overlap
ETS1 2 datasets
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 143 bp overlap
ChIP SCC-25 GSE109884.ETS1.SCC-25 178 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 224 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 209 bp overlap
FOS 2 datasets
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 260 bp overlap
ChIP endothelial cell of umbilical vein ENCFF415XBG 182 bp overlap
FOSL2 2 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 260 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 260 bp overlap
FOXA1 1 dataset
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 150 bp overlap
FOXA2 1 dataset
ChIP KerCT GSE90454.FOXA2.KerCT 182 bp overlap
FOXH1 1 dataset
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
GATA6 3 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 260 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 256 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 231 bp overlap
HOXB13 1 dataset
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 198 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 260 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 260 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 112 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 260 bp overlap
ChIP endothelial cell of umbilical vein ENCFF791BMV 249 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EFA.JUN.endothelial_umbilical-vein 157 bp overlap
KDM1A 1 dataset
ChIP keratinocyte_diff GSE57702.KDM1A.keratinocyte_diff 238 bp overlap
MAF 1 dataset
ChIP keratinocyte_epidermal_PROLIF GSE52953.MAF.keratinocyte_epidermal_PROLIF 162 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 139 bp overlap
MAFG 2 datasets
ChIP K-562 ENCSR818DQV.MAFG.K-562 226 bp overlap
ChIP K562 ENCFF455EEO 234 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 260 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 260 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 236 bp overlap
MED1 2 datasets
ChIP RH4 GSE83726.MED1.RH4 213 bp overlap
ChIP U-87MG GSE36354.MED1.U-87MG 260 bp overlap
MYC 6 datasets
ChIP MCF-10A ENCSR000DOM.MYC.MCF-10A 229 bp overlap
ChIP MCF-10A ENCSR000DOS.MYC.MCF-10A 225 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 199 bp overlap
ChIP PAVE GSE47152.MYC.PAVE 121 bp overlap
ChIP U-87MG GSE36354.MYC.U-87MG 179 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DLU.MYC.endothelial_umbilical-vein 78 bp overlap
MYCN 3 datasets
ChIP Kelly GSE94822.MYCN.Kelly 212 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 179 bp overlap
ChIP MYCN-3_low GSE83317.MYCN.MYCN-3_low 124 bp overlap
NANOG 1 dataset
ChIP WA09 GSE105028.NANOG.WA09 199 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 198 bp overlap
NFE2 3 datasets
ChIP K-562 ENCSR552YGL.NFE2.K-562 221 bp overlap
ChIP K-562 ENCSR000FCC.NFE2.K-562 88 bp overlap
ChIP K562 ENCFF047YKA 102 bp overlap
NFE2L2 6 datasets
ChIP A-549 ENCSR584GHV.NFE2L2.A-549 140 bp overlap
ChIP A549 ENCFF474YMB 128 bp overlap
ChIP Hep-G2 ENCSR488EES.NFE2L2.Hep-G2 118 bp overlap
ChIP HepG2 ENCFF178DRC 142 bp overlap
ChIP IMR-90 ENCFF059WEE 146 bp overlap
ChIP IMR-90 ENCSR197WGI.NFE2L2.IMR-90 150 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 260 bp overlap
NKX2-5 1 dataset
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 165 bp overlap
NR3C1 2 datasets
ChIP MCF-10A_EGF_DEX_20min GSE102355.NR3C1.MCF-10A_EGF_DEX_20min 248 bp overlap
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 184 bp overlap
NRF1 1 dataset
ChIP HMEC-1 GSE67867.NRF1.HMEC-1 109 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 151 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 260 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 177 bp overlap
POLR2A 2 datasets
ChIP neural cell ENCFF604SPB 128 bp overlap
ChIP vagina ENCFF305NWS 260 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 62 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 149 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 260 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 260 bp overlap
RAD21 4 datasets
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 248 bp overlap
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 236 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 260 bp overlap
ChIP neural cell ENCFF564MOT 139 bp overlap
RBPJ 4 datasets
ChIP GSC8-11 GSE74557.RBPJ.GSC8-11 195 bp overlap
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 254 bp overlap
ChIP SCC_0h GSE156486.RBPJ.SCC_0h 260 bp overlap
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 260 bp overlap
RCOR1 2 datasets
ChIP IMR-90 ENCSR000EFG.RCOR1.IMR-90 197 bp overlap
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 213 bp overlap
RELA 15 datasets
ChIP HUVEC-C_TNF GSE53998.RELA.HUVEC-C_TNF 238 bp overlap
ChIP HUVEC-C_TNF_JQ1 GSE53998.RELA.HUVEC-C_TNF_JQ1 260 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 219 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 246 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 224 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 102 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 233 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 260 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 151 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 212 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 195 bp overlap
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 146 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 151 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 195 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 161 bp overlap
REST 3 datasets
ChIP neural ENCSR000BTV.REST.neural 167 bp overlap
ChIP neural cell ENCFF882LXX 260 bp overlap
ChIP neural cell ENCFF882LXX 127 bp overlap
SMAD2 3 datasets
ChIP hESC GSE29422.SMAD2.hESC 227 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 260 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 235 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 260 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 260 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 260 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 260 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 260 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 260 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 260 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 239 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
SMARCA2 4 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 214 bp overlap
ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 257 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 231 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA2.NPC_R1159Q 213 bp overlap
SMARCA4 6 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA4.NPC_K755R-pos 260 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 260 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 260 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 86 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 260 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 259 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 170 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 243 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 260 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 238 bp overlap
SMC1 3 datasets
ChIP HCAEC GSE101921.SMC1.HCAEC 260 bp overlap
ChIP IMR-90_G GSE118494.SMC1.IMR-90_G 139 bp overlap
ChIP MCF-10A GSE101921.SMC1.MCF-10A 260 bp overlap
SMC1A 2 datasets
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 194 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d0 235 bp overlap
SOX2 3 datasets
ChIP HCC95 GSE137459.SOX2.HCC95 260 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 260 bp overlap
ChIP TT GSE46837.SOX2.TT 183 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 104 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_7aa GSE139053.SS18-SSX.fibroblast_7aa 260 bp overlap
STAG1 1 dataset
ChIP MCF-10A GSE101921.STAG1.MCF-10A 198 bp overlap
STAG2 3 datasets
ChIP HCAEC GSE101921.STAG2.HCAEC 131 bp overlap
ChIP HMEC-1 GSE101921.STAG2.HMEC-1 247 bp overlap
ChIP MCF-10A GSE101921.STAG2.MCF-10A 260 bp overlap
STAT3 5 datasets
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 260 bp overlap
ChIP MCF-10A ENCSR000DOZ.STAT3.MCF-10A 185 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.STAT3.MCF10A-Er-Src_EtOH 180 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 260 bp overlap
ChIP SUM159PT GSE152203.STAT3.SUM159PT 252 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TP53 5 datasets
ChIP GM06170 GSE55727.TP53.GM06170 164 bp overlap
ChIP IMR-90_NUT3A GSE58740.TP53.IMR-90_NUT3A 195 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP53.MCF-10A_Nutlin3A 238 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 201 bp overlap
ChIP keratinocyte_CISP GSE56674.TP53.keratinocyte_CISP 139 bp overlap
TP63 22 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 233 bp overlap
ChIP EP156T GSE43111.TP63.EP156T 169 bp overlap
ChIP HCC95 GSE46837.TP63.HCC95 117 bp overlap
ChIP HaCaT_LacZ_TGFB GSE60814.TP63.HaCaT_LacZ_TGFB 95 bp overlap
ChIP JHU-029 GSE88859.TP63.JHU-029 260 bp overlap
ChIP KYSE-70 GSE46837.TP63.KYSE-70 151 bp overlap
ChIP LK2_DNp63 GSE137459.TP63.LK2_DNp63 260 bp overlap
ChIP MCF-10A_DCIS GSE72009.TP63.MCF-10A_DCIS 196 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 260 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 118 bp overlap
ChIP TT GSE46837.TP63.TT 171 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 247 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 145 bp overlap
ChIP keratinocyte_ADRIA GSE56674.TP63.keratinocyte_ADRIA 149 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 260 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 260 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 230 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 215 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 203 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 139 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 179 bp overlap
ChIP keratinocyte_epidermal_KDPAF GSE67382.TP63.keratinocyte_epidermal_KDPAF 195 bp overlap
TRIM28 3 datasets
ChIP HEK293 ENCFF582MWI 260 bp overlap
ChIP HEK293 ENCFF582MWI 216 bp overlap
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 260 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 195 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 194 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 191 bp overlap
ZNF561 2 datasets
ChIP HEK293 ENCFF399XKF 206 bp overlap
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 50 bp overlap