chr14 : 90,605,311 90,605,782
471 bp 80 TFs 3 linked genes
This 471 bp open chromatin element is linked to CALM1, TTC7B, and NRDE2 and is bound by 80 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
CALM1 208.6 kb Distal Multiome
TTC7B 210.9 kb Distal Multiome
NRDE2 273.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr14:90,600,311 – 90,610,782
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 471 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 409 bp overlap
ATF2 3 datasets
ChIP HepG2 ENCFF955VER 96 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 73 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 329 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 175 bp overlap
BRD4 1 dataset
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 372 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 364 bp overlap
CREB1 4 datasets
ChIP GM23338 ENCFF432ZEW 304 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 209 bp overlap
ChIP H1 ENCFF955PMP 127 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 252 bp overlap
CTCFL 3 datasets
Motif DE_36h DE_36h-CTCFL_MA1102.3 8 bp overlap
Motif DE_60h DE_60h-CTCFL_MA1102.3 8 bp overlap
Motif DE_72h DE_72h-CTCFL_MA1102.3 8 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 297 bp overlap
ChIP BLaER1 ENCFF335XTP 251 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 294 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 221 bp overlap
FOXA1 4 datasets
Motif DE_72h DE_72h-FOXA1_MA0148.5 8 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 102 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 292 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 199 bp overlap
FOXA2 6 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 318 bp overlap
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 284 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 108 bp overlap
ChIP DE DE-FOXA2-1 471 bp overlap
ChIP DE DE-FOXA2-2 471 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 308 bp overlap
FOXA3 1 dataset
Motif DE_72h DE_72h-FOXA3_MA1683.2 7 bp overlap
FOXD1 1 dataset
Motif DE_72h DE_72h-FOXD1_MA0031.2 7 bp overlap
FOXG1 1 dataset
Motif DE_72h DE_72h-FOXG1_MA0613.1 8 bp overlap
FOXI1 1 dataset
Motif DE_72h DE_72h-FOXI1_MA0042.2 7 bp overlap
FOXK1 1 dataset
Motif DE_72h DE_72h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_72h DE_72h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_72h DE_72h-FOXL1_MA0033.2 7 bp overlap
FOXN3 1 dataset
Motif DE_72h DE_72h-FOXN3_MA1489.1 8 bp overlap
FOXO4 1 dataset
Motif DE_72h DE_72h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_72h DE_72h-FOXO6_MA0849.1 7 bp overlap
FOXP1 2 datasets
Motif DE_72h DE_72h-FOXP1_MA0481.4 7 bp overlap
ChIP H9 GSE31006.FOXP1.H9 199 bp overlap
FOXP2 1 dataset
Motif DE_72h DE_72h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_72h DE_72h-FOXP3_MA0850.1 7 bp overlap
FOXP4 1 dataset
Motif DE_72h DE_72h-FOXP4_MA2117.1 7 bp overlap
Foxf1 1 dataset
Motif DE_72h DE_72h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_72h DE_72h-Foxj2_MA0614.1 8 bp overlap
Foxo1 1 dataset
Motif DE_72h DE_72h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_72h DE_72h-Foxo3_MA0157.4 7 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 455 bp overlap
ChIP DE DE-GATA4-2 471 bp overlap
ChIP foregut GSE117136.GATA4.foregut 275 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 287 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 452 bp overlap
ChIP DE DE-GATA6-2 471 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 467 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 471 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 471 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 471 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 471 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 471 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 469 bp overlap
ChIP foregut GSE117136.GATA6.foregut 328 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 373 bp overlap
GFI1B 2 datasets
ChIP K-562 ENCSR509GDT.GFI1B.K-562 111 bp overlap
ChIP SET-2_GSK GSE121424.GFI1B.SET-2_GSK 237 bp overlap
GLIS2 3 datasets
Motif DE_36h DE_36h-GLIS2_MA0736.1 14 bp overlap
Motif DE_60h DE_60h-GLIS2_MA0736.1 14 bp overlap
Motif DE_72h DE_72h-GLIS2_MA0736.1 14 bp overlap
Gli1 3 datasets
Motif DE_36h DE_36h-Gli1_MA1990.2 10 bp overlap
Motif DE_60h DE_60h-Gli1_MA1990.2 10 bp overlap
Motif DE_72h DE_72h-Gli1_MA1990.2 10 bp overlap
Gli2 3 datasets
Motif DE_36h DE_36h-Gli2_MA0734.4 9 bp overlap
Motif DE_60h DE_60h-Gli2_MA0734.4 9 bp overlap
Motif DE_72h DE_72h-Gli2_MA0734.4 9 bp overlap
HDAC2 1 dataset
ChIP H1 ENCFF353UJQ 471 bp overlap
IRF4 1 dataset
Motif DE_72h DE_72h-IRF4_MA1419.2 14 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 300 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 307 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 344 bp overlap
JUN::JUNB 3 datasets
Motif DE_36h DE_36h-JUNJUNB_MA1132.2 8 bp overlap
Motif DE_60h DE_60h-JUNJUNB_MA1132.2 8 bp overlap
Motif DE_72h DE_72h-JUNJUNB_MA1132.2 8 bp overlap
KDM1A 1 dataset
ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 308 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 213 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 421 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 392 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 471 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 274 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 134 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 348 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 210 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 325 bp overlap
Nfat5 1 dataset
Motif DE_72h DE_72h-Nfat5_MA0606.3 8 bp overlap
Nfatc2 1 dataset
Motif DE_72h DE_72h-Nfatc2_MA0152.3 8 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 306 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 307 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 56 bp overlap
Plagl1 3 datasets
Motif DE_36h DE_36h-Plagl1_MA1615.2 8 bp overlap
Motif DE_60h DE_60h-Plagl1_MA1615.2 8 bp overlap
Motif DE_72h DE_72h-Plagl1_MA1615.2 8 bp overlap
RAD21 1 dataset
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 171 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 471 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 196 bp overlap
REL 1 dataset
Motif DE_72h DE_72h-REL_MA0101.1 10 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 382 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 211 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 441 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 388 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 340 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 268 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 344 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 407 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 344 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 373 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 240 bp overlap
SMARCA4 4 datasets
ChIP NSC GSE125033.SMARCA4.NSC 65 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 253 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 471 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 291 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 471 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 301 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 466 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 381 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 286 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 333 bp overlap
SOX10 3 datasets
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 299 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 367 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 315 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 153 bp overlap
SPI1 1 dataset
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 110 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 288 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 115 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 250 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 191 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 220 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 147 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 307 bp overlap
ZIC1 3 datasets
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
Motif DE_60h DE_60h-ZIC1_MA0696.1 14 bp overlap
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZIC4 3 datasets
Motif DE_36h DE_36h-ZIC4_MA0751.2 14 bp overlap
Motif DE_60h DE_60h-ZIC4_MA0751.2 14 bp overlap
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZIC5 3 datasets
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
Motif DE_60h DE_60h-ZIC5_MA1584.2 15 bp overlap
Motif DE_72h DE_72h-ZIC5_MA1584.2 15 bp overlap
ZNF24 3 datasets
Motif DE_36h DE_36h-ZNF24_MA1124.1 13 bp overlap
Motif DE_60h DE_60h-ZNF24_MA1124.1 13 bp overlap
Motif DE_72h DE_72h-ZNF24_MA1124.1 13 bp overlap
ZNF354C 1 dataset
ChIP K562 ENCFF371JMA 64 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 84 bp overlap
ZNF768 1 dataset
Motif DE_72h DE_72h-ZNF768_MA1731.2 9 bp overlap
ZNF816 2 datasets
Motif DE_60h DE_60h-ZNF816_MA1719.2 15 bp overlap
Motif DE_72h DE_72h-ZNF816_MA1719.2 15 bp overlap