chr1 : 225,939,444 – 225,939,998
554 bp 62 TFs 15 linked genes
This 554 bp open chromatin element is linked to 15 target genes and is bound by 62 transcription factors.
Linked Genes
15 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LEFTY2 1.2 kb Proximal Proximity
ENSG00000248322 1.9 kb Proximal Proximity
PYCR2 15.4 kb Distal Multiome
LEFTY1 28.3 kb Distal Multiome
TMEM63A 57.3 kb Distal Multiome
SDE2 59.7 kb Distal Multiome
ENSG00000242861 93.1 kb Distal Multiome
H3-3A-DT 122.2 kb Distal Multiome
H3-3A 123.0 kb Distal Multiome
EPHX1 129.5 kb Distal Multiome
SRP9 161.8 kb Distal Multiome
ACBD3 247.1 kb Distal Multiome
MIXL1 284.0 kb Distal Multiome
ENAH 286.5 kb Distal Multiome
LBR 511.6 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:225,934,444 – 225,944,998
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP WTC11 ENCFF556XTF 217 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 218 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 311 bp overlap
BRD4 2 datasets
ChIP hESC GSE33281.BRD4.hESC 119 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 373 bp overlap
CTCF 1 dataset
Motif ES_0h ES_0h-CTCF_MA0139.2 15 bp overlap
CTCFL 6 datasets
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
Motif DE_24h DE_24h-CTCFL_MA1102.3 8 bp overlap
Motif DE_48h DE_48h-CTCFL_MA1102.3 8 bp overlap
Motif DE_72h DE_72h-CTCFL_MA1102.3 8 bp overlap
Motif ES_0h ES_0h-CTCFL_MA1102.3 8 bp overlap
ChIP K-562 GSE70764.CTCFL.K-562 148 bp overlap
E2F1 1 dataset
ChIP WTC11 ENCFF994SXO 165 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 431 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 122 bp overlap
EGR1 3 datasets
Motif DE_12h DE_12h-EGR1_MA0162.5 10 bp overlap
Motif DE_24h DE_24h-EGR1_MA0162.5 10 bp overlap
Motif DE_48h DE_48h-EGR1_MA0162.5 10 bp overlap
ERG 1 dataset
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 227 bp overlap
ESR1 1 dataset
ChIP Ishikawa GSE99905.ESR1.Ishikawa 237 bp overlap
EZH2 2 datasets
ChIP astrocyte ENCFF365JTP 243 bp overlap
ChIP astrocyte ENCFF365JTP 554 bp overlap
FIGLA 3 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 391 bp overlap
Foxn1 5 datasets
Motif DE_12h DE_12h-Foxn1_MA1684.1 6 bp overlap
Motif DE_24h DE_24h-Foxn1_MA1684.1 6 bp overlap
Motif DE_48h DE_48h-Foxn1_MA1684.1 6 bp overlap
Motif DE_72h DE_72h-Foxn1_MA1684.1 6 bp overlap
Motif ES_0h ES_0h-Foxn1_MA1684.1 6 bp overlap
GLIS2 5 datasets
Motif DE_12h DE_12h-GLIS2_MA0736.1 14 bp overlap
Motif DE_24h DE_24h-GLIS2_MA0736.1 14 bp overlap
Motif DE_48h DE_48h-GLIS2_MA0736.1 14 bp overlap
Motif DE_72h DE_72h-GLIS2_MA0736.1 14 bp overlap
Motif ES_0h ES_0h-GLIS2_MA0736.1 14 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 244 bp overlap
HMGXB4 1 dataset
ChIP WTC11 ENCFF962POR 246 bp overlap
INSM1 4 datasets
Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap
Motif DE_24h DE_24h-INSM1_MA0155.1 12 bp overlap
Motif DE_48h DE_48h-INSM1_MA0155.1 12 bp overlap
Motif DE_72h DE_72h-INSM1_MA0155.1 12 bp overlap
KDM4A 3 datasets
ChIP H1 ENCFF078LED 268 bp overlap
ChIP H1 ENCFF078LED 527 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 332 bp overlap
KLF1 5 datasets
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
Motif DE_24h DE_24h-KLF1_MA0493.3 8 bp overlap
Motif DE_48h DE_48h-KLF1_MA0493.3 8 bp overlap
Motif DE_72h DE_72h-KLF1_MA0493.3 8 bp overlap
Motif ES_0h ES_0h-KLF1_MA0493.3 8 bp overlap
KLF10 10 datasets
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
Motif DE_24h DE_24h-KLF10_MA1511.2 9 bp overlap
Motif DE_24h DE_24h-KLF10_MA1511.2 9 bp overlap
Motif DE_48h DE_48h-KLF10_MA1511.2 9 bp overlap
Motif DE_48h DE_48h-KLF10_MA1511.2 9 bp overlap
Motif DE_72h DE_72h-KLF10_MA1511.2 9 bp overlap
Motif DE_72h DE_72h-KLF10_MA1511.2 9 bp overlap
Motif ES_0h ES_0h-KLF10_MA1511.2 9 bp overlap
Motif ES_0h ES_0h-KLF10_MA1511.2 9 bp overlap
KLF11 5 datasets
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
Motif DE_24h DE_24h-KLF11_MA1512.2 10 bp overlap
Motif DE_48h DE_48h-KLF11_MA1512.2 10 bp overlap
Motif DE_72h DE_72h-KLF11_MA1512.2 10 bp overlap
Motif ES_0h ES_0h-KLF11_MA1512.2 10 bp overlap
KLF12 5 datasets
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
Motif DE_24h DE_24h-KLF12_MA0742.2 9 bp overlap
Motif DE_48h DE_48h-KLF12_MA0742.2 9 bp overlap
Motif DE_72h DE_72h-KLF12_MA0742.2 9 bp overlap
Motif ES_0h ES_0h-KLF12_MA0742.2 9 bp overlap
KLF14 5 datasets
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
Motif DE_48h DE_48h-KLF14_MA0740.2 9 bp overlap
Motif DE_72h DE_72h-KLF14_MA0740.2 9 bp overlap
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
KLF15 5 datasets
Motif DE_12h DE_12h-KLF15_MA1513.2 8 bp overlap
Motif DE_24h DE_24h-KLF15_MA1513.2 8 bp overlap
Motif DE_48h DE_48h-KLF15_MA1513.2 8 bp overlap
Motif DE_72h DE_72h-KLF15_MA1513.2 8 bp overlap
Motif ES_0h ES_0h-KLF15_MA1513.2 8 bp overlap
KLF16 9 datasets
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap
Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap
Motif DE_48h DE_48h-KLF16_MA0741.1 11 bp overlap
Motif DE_48h DE_48h-KLF16_MA0741.1 11 bp overlap
Motif DE_72h DE_72h-KLF16_MA0741.1 11 bp overlap
Motif DE_72h DE_72h-KLF16_MA0741.1 11 bp overlap
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
KLF2 5 datasets
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
Motif DE_24h DE_24h-KLF2_MA1515.2 8 bp overlap
Motif DE_48h DE_48h-KLF2_MA1515.2 8 bp overlap
Motif DE_72h DE_72h-KLF2_MA1515.2 8 bp overlap
Motif ES_0h ES_0h-KLF2_MA1515.2 8 bp overlap
KLF4 5 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
Motif DE_48h DE_48h-KLF4_MA0039.5 8 bp overlap
Motif DE_72h DE_72h-KLF4_MA0039.5 8 bp overlap
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
KLF5 5 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap
Motif DE_72h DE_72h-KLF5_MA0599.1 10 bp overlap
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
KLF7 10 datasets
Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap
Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap
Motif DE_24h DE_24h-KLF7_MA1959.2 8 bp overlap
Motif DE_24h DE_24h-KLF7_MA1959.2 8 bp overlap
Motif DE_48h DE_48h-KLF7_MA1959.2 8 bp overlap
Motif DE_48h DE_48h-KLF7_MA1959.2 8 bp overlap
Motif DE_72h DE_72h-KLF7_MA1959.2 8 bp overlap
Motif DE_72h DE_72h-KLF7_MA1959.2 8 bp overlap
Motif ES_0h ES_0h-KLF7_MA1959.2 8 bp overlap
Motif ES_0h ES_0h-KLF7_MA1959.2 8 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP WTC11 ENCFF223QFY 539 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 127 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 264 bp overlap
Nrf1 3 datasets
Motif DE_12h DE_12h-Nrf1_MA0506.3 12 bp overlap
Motif DE_24h DE_24h-Nrf1_MA0506.3 12 bp overlap
Motif DE_48h DE_48h-Nrf1_MA0506.3 12 bp overlap
OGG1 1 dataset
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 192 bp overlap
PATZ1 8 datasets
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap
Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap
Motif DE_48h DE_48h-PATZ1_MA1961.2 11 bp overlap
Motif DE_48h DE_48h-PATZ1_MA1961.2 11 bp overlap
Motif DE_72h DE_72h-PATZ1_MA1961.2 11 bp overlap
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 223 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 418 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 554 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 246 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 468 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 463 bp overlap
SMAD3 1 dataset
ChIP WTC11 ENCFF815YYQ 94 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 141 bp overlap
SP1 11 datasets
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
Motif DE_24h DE_24h-SP1_MA0079.5 9 bp overlap
Motif DE_24h DE_24h-SP1_MA0079.5 9 bp overlap
Motif DE_48h DE_48h-SP1_MA0079.5 9 bp overlap
Motif DE_48h DE_48h-SP1_MA0079.5 9 bp overlap
Motif DE_72h DE_72h-SP1_MA0079.5 9 bp overlap
Motif DE_72h DE_72h-SP1_MA0079.5 9 bp overlap
Motif ES_0h ES_0h-SP1_MA0079.5 9 bp overlap
ChIP WTC11 ENCFF688PEU 498 bp overlap
ChIP WTC11 ENCFF688PEU 270 bp overlap
SP2 5 datasets
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
Motif DE_24h DE_24h-SP2_MA0516.3 9 bp overlap
Motif DE_48h DE_48h-SP2_MA0516.3 9 bp overlap
Motif DE_72h DE_72h-SP2_MA0516.3 9 bp overlap
Motif ES_0h ES_0h-SP2_MA0516.3 9 bp overlap
SP3 10 datasets
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
Motif DE_48h DE_48h-SP3_MA0746.3 11 bp overlap
Motif DE_48h DE_48h-SP3_MA0746.3 11 bp overlap
Motif DE_72h DE_72h-SP3_MA0746.3 11 bp overlap
Motif DE_72h DE_72h-SP3_MA0746.3 11 bp overlap
Motif ES_0h ES_0h-SP3_MA0746.3 11 bp overlap
Motif ES_0h ES_0h-SP3_MA0746.3 11 bp overlap
SP4 10 datasets
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
Motif DE_48h DE_48h-SP4_MA0685.2 9 bp overlap
Motif DE_48h DE_48h-SP4_MA0685.2 9 bp overlap
Motif DE_72h DE_72h-SP4_MA0685.2 9 bp overlap
Motif DE_72h DE_72h-SP4_MA0685.2 9 bp overlap
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
SP8 9 datasets
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
Motif DE_24h DE_24h-SP8_MA0747.2 11 bp overlap
Motif DE_24h DE_24h-SP8_MA0747.2 11 bp overlap
Motif DE_48h DE_48h-SP8_MA0747.2 11 bp overlap
Motif DE_48h DE_48h-SP8_MA0747.2 11 bp overlap
Motif DE_72h DE_72h-SP8_MA0747.2 11 bp overlap
Motif DE_72h DE_72h-SP8_MA0747.2 11 bp overlap
Motif ES_0h ES_0h-SP8_MA0747.2 11 bp overlap
SP9 10 datasets
Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap
Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap
Motif DE_24h DE_24h-SP9_MA1564.2 10 bp overlap
Motif DE_24h DE_24h-SP9_MA1564.2 10 bp overlap
Motif DE_48h DE_48h-SP9_MA1564.2 10 bp overlap
Motif DE_48h DE_48h-SP9_MA1564.2 10 bp overlap
Motif DE_72h DE_72h-SP9_MA1564.2 10 bp overlap
Motif DE_72h DE_72h-SP9_MA1564.2 10 bp overlap
Motif ES_0h ES_0h-SP9_MA1564.2 10 bp overlap
Motif ES_0h ES_0h-SP9_MA1564.2 10 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 433 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 480 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 305 bp overlap
THAP1 3 datasets
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
Motif DE_24h DE_24h-THAP1_MA0597.3 8 bp overlap
Motif DE_48h DE_48h-THAP1_MA0597.3 8 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 104 bp overlap
ZBTB24 4 datasets
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
Motif DE_24h DE_24h-ZBTB24_MA2330.1 10 bp overlap
Motif DE_48h DE_48h-ZBTB24_MA2330.1 10 bp overlap
Motif ES_0h ES_0h-ZBTB24_MA2330.1 10 bp overlap
ZBTB7B 3 datasets
Motif DE_12h DE_12h-ZBTB7B_MA0694.2 10 bp overlap
Motif DE_24h DE_24h-ZBTB7B_MA0694.2 10 bp overlap
Motif DE_48h DE_48h-ZBTB7B_MA0694.2 10 bp overlap
ZBTB7C 3 datasets
Motif DE_12h DE_12h-ZBTB7C_MA0695.2 8 bp overlap
Motif DE_24h DE_24h-ZBTB7C_MA0695.2 8 bp overlap
Motif DE_48h DE_48h-ZBTB7C_MA0695.2 8 bp overlap
ZEB1 3 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
ZNF148 5 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap
Motif DE_48h DE_48h-ZNF148_MA1653.2 10 bp overlap
Motif DE_72h DE_72h-ZNF148_MA1653.2 10 bp overlap
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF281 9 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap
Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF320 5 datasets
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
Motif DE_24h DE_24h-ZNF320_MA1976.2 20 bp overlap
Motif DE_48h DE_48h-ZNF320_MA1976.2 20 bp overlap
Motif DE_72h DE_72h-ZNF320_MA1976.2 20 bp overlap
Motif ES_0h ES_0h-ZNF320_MA1976.2 20 bp overlap
ZNF770 4 datasets
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Motif DE_24h DE_24h-ZNF770_MA2099.1 8 bp overlap
Motif DE_48h DE_48h-ZNF770_MA2099.1 8 bp overlap
Motif DE_72h DE_72h-ZNF770_MA2099.1 8 bp overlap
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