Predicted to enable RNA binding activity and signal recognition particle binding activity. Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane. Predicted to be located in cytosol. Predicted to be part of signal recognition particle, endoplasmic reticulum targeting. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for SRP9. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = SRP9 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of SRP9, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr1:225,474,969–225,475,612 | 302.7 kb | Distal (>10kb) Multiome HiCAR | 742 | |
| chr1:225,627,340–225,627,898 | 150.2 kb | Distal (>10kb) Multiome | 254 | |
| chr1:225,652,334–225,654,131 | 124.6 kb | Distal (>10kb) Multiome HiCAR | 786 | |
| chr1:225,754,870–225,755,548 | 22.7 kb | Distal (>10kb) Multiome | 382 | |
| chr1:225,768,775–225,769,570 | 8.6 kb | Proximal (<10kb) Multiome | 313 | |
| chr1:225,770,360–225,771,149 | 6.7 kb | Proximal (<10kb) | 179 | |
| chr1:225,771,884–225,772,638 | 5.4 kb | Proximal (<10kb) Multiome | 488 | |
| chr1:225,777,167–225,778,412 | 61 bp | At TSS Multiome | 942 | |
| chr1:225,809,711–225,811,548 | 32.3 kb | Distal (>10kb) Multiome | 654 | |
| chr1:225,845,424–225,846,556 | 68.1 kb | Distal (>10kb) Multiome | 416 | |
| chr1:225,881,255–225,884,173 | 104.5 kb | Distal (>10kb) Multiome | 879 | |
| chr1:225,888,552–225,889,596 | 111.4 kb | Distal (>10kb) Multiome | 185 | |
| chr1:225,898,735–225,899,922 | 121.7 kb | Distal (>10kb) Multiome | 335 | |
| chr1:225,903,782–225,904,454 | 126.2 kb | Distal (>10kb) Multiome | 40 | |
| chr1:225,908,825–225,909,327 | 131.2 kb | Distal (>10kb) Multiome | 101 | |
| chr1:225,910,978–225,911,799 | 133.6 kb | Distal (>10kb) Multiome | 344 | |
| chr1:225,923,776–225,924,773 | 146.5 kb | Distal (>10kb) Multiome | 960 | |
| chr1:225,939,444–225,939,998 | 161.8 kb | Distal (>10kb) Multiome | 62 | |
| chr1:225,945,518–225,946,038 | 167.9 kb | Distal (>10kb) Multiome | 172 | |
| chr1:225,948,616–225,949,435 | 171.2 kb | Distal (>10kb) Multiome | 175 | |
| chr1:225,957,776–225,958,797 | 180.5 kb | Distal (>10kb) Multiome | 175 | |
| chr1:225,999,043–226,000,159 | 221.7 kb | Distal (>10kb) Multiome | 969 | |
| chr1:226,061,587–226,063,333 | 284.7 kb | Distal (>10kb) Multiome | 976 |
Genomic view of the SRP9 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.