chr13 : 114,279,147 114,279,616
469 bp 65 TFs 1 linked gene
This 469 bp open chromatin element is linked to UPF3A and is bound by 65 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
UPF3A 2.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:114,274,147 – 114,284,616
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
ATF4 1 dataset
ChIP K562 ENCFF030XBX 267 bp overlap
BCL6 1 dataset
ChIP K562 ENCFF501MST 257 bp overlap
BRD2 1 dataset
ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 249 bp overlap
BRD3 1 dataset
ChIP K-562 GSE140325.BRD3.K-562 152 bp overlap
BRD4 7 datasets
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 268 bp overlap
ChIP K-562 GSE140325.BRD4.K-562 245 bp overlap
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 244 bp overlap
ChIP K-562_dilution-6-100 GSE140325.BRD4.K-562_dilution-6-100 297 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 229 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 342 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 196 bp overlap
BRD9 2 datasets
ChIP K-562 ENCSR177XCS.BRD9.K-562 321 bp overlap
ChIP K562 ENCFF480JXZ 388 bp overlap
CREB3 3 datasets
ChIP K-562 ENCSR093FKD.CREB3.K-562 445 bp overlap
ChIP K562 ENCFF985QJI 392 bp overlap
ChIP K562 ENCFF985QJI 282 bp overlap
DPF2 1 dataset
ChIP K562 ENCFF775HUO 452 bp overlap
E2F5 1 dataset
ChIP K562 ENCFF688PUB 469 bp overlap
E4F1 1 dataset
ChIP K-562 ENCSR731LHZ.E4F1.K-562 422 bp overlap
ELF1 1 dataset
ChIP K-562 ENCSR000BMD.ELF1.K-562 141 bp overlap
ELF2 1 dataset
ChIP K562 ENCFF787SME 118 bp overlap
ELF3 1 dataset
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 102 bp overlap
ELF4 2 datasets
ChIP K562 ENCFF200OMJ 246 bp overlap
ChIP K562 ENCFF454SBL 117 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 201 bp overlap
EP300 1 dataset
ChIP K-562 ENCSR000EGE.EP300.K-562 143 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 174 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 469 bp overlap
ChIP DE DE-FOXA2-2 397 bp overlap
GATA1 1 dataset
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 160 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 450 bp overlap
ChIP DE DE-GATA4-2 397 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 452 bp overlap
ChIP DE DE-GATA6-2 381 bp overlap
GMEB1 1 dataset
ChIP K562 ENCFF679VBB 259 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 266 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR197ALX.HDGF.K-562 412 bp overlap
ChIP K-562 ENCSR563YDA.HDGF.K-562 304 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 469 bp overlap
ChIP K562 ENCFF055GAZ 321 bp overlap
ChIP K562 ENCFF317JJX 317 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 385 bp overlap
IKZF1 3 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 302 bp overlap
ChIP K562 ENCFF348IBL 127 bp overlap
ChIP K562 ENCFF771OHZ 469 bp overlap
IRF1 1 dataset
ChIP K-562 ENCSR854MCV.IRF1.K-562 351 bp overlap
JUN 1 dataset
ChIP HAEC_oxpapc_4h GSE89970.JUN.HAEC_oxpapc_4h 223 bp overlap
JUND 2 datasets
ChIP K-562 ENCSR000EGN.JUND.K-562 207 bp overlap
ChIP K562 ENCFF336RCR 426 bp overlap
KLF6 1 dataset
ChIP K562 ENCFF948QSP 242 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 186 bp overlap
MYC 1 dataset
ChIP CC-LP-1 GSE124430.MYC.CC-LP-1 414 bp overlap
NFYA 1 dataset
ChIP K-562 GSE26439.NFYA.K-562 185 bp overlap
NFYB 1 dataset
ChIP K-562 GSE26439.NFYB.K-562 188 bp overlap
NR2C1 1 dataset
ChIP K562 ENCFF568JLK 250 bp overlap
NR2F1 1 dataset
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 438 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 469 bp overlap
POLR2A 1 dataset
ChIP K562 ENCFF137JSF 446 bp overlap
RELA 2 datasets
ChIP K-562 ENCSR772EEN.RELA.K-562 423 bp overlap
ChIP K562 ENCFF892SPR 409 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 305 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 74 bp overlap
SMAD3 1 dataset
ChIP K562 ENCFF885DQE 265 bp overlap
SMARCA4 3 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 434 bp overlap
ChIP K562 ENCFF506JCB 469 bp overlap
ChIP K562 ENCFF506JCB 280 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 286 bp overlap
SOX6 3 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 354 bp overlap
ChIP K562 ENCFF059YCJ 404 bp overlap
ChIP K562 ENCFF059YCJ 303 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 365 bp overlap
XRCC5 1 dataset
ChIP K-562 GSE120104.XRCC5.K-562 248 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 270 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 277 bp overlap
ZFP1 1 dataset
ChIP K562 ENCFF777OLK 208 bp overlap
ZFX 2 datasets
ChIP K-562 ENCSR920ASP.ZFX.K-562 224 bp overlap
ChIP K562 ENCFF536AJO 469 bp overlap
ZKSCAN8 1 dataset
ChIP K562 ENCFF387ETI 275 bp overlap
ZNF175 2 datasets
ChIP K-562 ENCSR011PEI.ZNF175.K-562 284 bp overlap
ChIP K562 ENCFF497AEJ 283 bp overlap
ZNF23 1 dataset
ChIP K562 ENCFF805KVM 284 bp overlap
ZNF592 2 datasets
ChIP K562 ENCFF547OSS 418 bp overlap
ChIP K562 ENCFF547OSS 241 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 217 bp overlap
ZNF644 1 dataset
ChIP K562 ENCFF290PDB 452 bp overlap
ZNF766 1 dataset
ChIP K562 ENCFF348LDO 348 bp overlap
ZSCAN29 1 dataset
ChIP K562 ENCFF797SOU 384 bp overlap