chr13 : 62,644,170 62,644,566
396 bp 105 TFs 0 linked genes
This 396 bp open chromatin element has no linked target genes and is bound by 105 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:62,639,170 – 62,649,566
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
105 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 262 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BCL6 3 datasets
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 319 bp overlap
ChIP OCI-Ly1 GSE107920.BCL6.OCI-Ly1 188 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 396 bp overlap
BRD4 5 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 248 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 278 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 184 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 271 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 298 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 114 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 284 bp overlap
CTCF 2 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 230 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 251 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 218 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCFF813OXE 265 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 173 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 339 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 181 bp overlap
ESR1 2 datasets
Motif DE_12h DE_12h-ESR1_MA0112.4 15 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 160 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXM1 1 dataset
ChIP GM12878 ENCSR000BRU.FOXM1.GM12878 61 bp overlap
FOXP1 1 dataset
ChIP SU-DHL-6 ERP010999.FOXP1.SU-DHL-6 214 bp overlap
GABPA 1 dataset
ChIP GM12878 ENCSR331HPA.GABPA.GM12878 106 bp overlap
GATA3 1 dataset
ChIP Kelly GSE94822.GATA3.Kelly 277 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 396 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 396 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 396 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 262 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 300 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
Hmx1 1 dataset
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
IRF4 1 dataset
ChIP OCI-Ly10 GSE142493.IRF4.OCI-Ly10 196 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 219 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
KDM1A 2 datasets
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 199 bp overlap
ChIP SU-DHL-4 GSE119038.KDM1A.SU-DHL-4 222 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
MAX 3 datasets
ChIP P493-6 GSE36354.MAX.P493-6 269 bp overlap
ChIP P493-6 GSE42262.MAX.P493-6 273 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 176 bp overlap
MED1 1 dataset
ChIP HCT-116 GSE121798.MED1.HCT-116 248 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 188 bp overlap
MEF2B 2 datasets
ChIP DLBCL GSE110682.MEF2B.DLBCL 347 bp overlap
ChIP KARPAS422 GSE69558.MEF2B.KARPAS422 195 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCFF746HVJ 396 bp overlap
MYC 1 dataset
ChIP P493-6 GSE77061.MYC.P493-6 161 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 226 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 129 bp overlap
MYOD1 2 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 218 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 253 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 277 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 223 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 156 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 288 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 232 bp overlap
NCOR1 1 dataset
ChIP OCI-Ly1 GSE29282.NCOR1.OCI-Ly1 199 bp overlap
NCOR2 1 dataset
ChIP OCI-Ly1 GSE29282.NCOR2.OCI-Ly1 252 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NKX2-2 1 dataset
Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap
NKX2-3 1 dataset
Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap
NKX2-5 1 dataset
Motif DE_12h DE_12h-NKX2-5_MA0063.3 7 bp overlap
NKX2-8 1 dataset
Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nkx3-2 1 dataset
Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
PAX5 3 datasets
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 208 bp overlap
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 147 bp overlap
ChIP OCI-Ly7 GSE69558.PAX5.OCI-Ly7 222 bp overlap
PBX3 1 dataset
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 148 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 283 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 62 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 183 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 396 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 262 bp overlap
PKNOX1 2 datasets
ChIP GM12878 ENCFF589FCY 377 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 374 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU2F3 2 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 312 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU5F1 2 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 145 bp overlap
Plagl1 1 dataset
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 145 bp overlap
RORA 1 dataset
Motif DE_12h DE_12h-RORA_MA0072.2 11 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 70 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 110 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 217 bp overlap
TBX19 1 dataset
Motif DE_12h DE_12h-TBX19_MA0804.2 17 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 374 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 211 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 123 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 198 bp overlap
TCF3 2 datasets
ChIP GM12878 ENCFF658WIO 275 bp overlap
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 228 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 180 bp overlap
TERF2 1 dataset
ChIP LCL GSE55053.TERF2.LCL 83 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 366 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 230 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 230 bp overlap
ZBTB24 1 dataset
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZNF320 1 dataset
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF784 1 dataset
Motif DE_12h DE_12h-ZNF784_MA1717.2 8 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap