chr13 : 22,881,134 – 22,882,439
1,305 bp 91 TFs 1 linked gene
This 1.3 kb open chromatin element is linked to ENSG00000262198 and is bound by 91 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000262198 1.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:22,876,134 – 22,887,439
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
91 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 126 bp overlap
ARID1A 3 datasets
ChIP HAP1 GSE108387.ARID1A.HAP1 199 bp overlap
ChIP RMG-I GSE120058.ARID1A.RMG-I 584 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 224 bp overlap
ATOH7 1 dataset
Motif DE_24h DE_24h-ATOH7_MA1468.1 10 bp overlap
Atoh1 1 dataset
Motif DE_24h DE_24h-Atoh1_MA1467.3 7 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 265 bp overlap
BRD4 5 datasets
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 244 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 939 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 176 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 267 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 247 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 247 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 146 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 288 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 159 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 202 bp overlap
CTCF 2 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 269 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 317 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 289 bp overlap
ESR1 1 dataset
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 314 bp overlap
ETV2::DRGX 1 dataset
Motif DE_24h DE_24h-ETV2DRGX_MA1940.2 12 bp overlap
FOXO1-PAX3 1 dataset
ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 184 bp overlap
GATA6 10 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 451 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 230 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 400 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 254 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 451 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 219 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 490 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 233 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 472 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 216 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 360 bp overlap
HAND2 2 datasets
Motif DE_24h DE_24h-HAND2_MA1638.2 6 bp overlap
Motif DE_24h DE_24h-HAND2_MA1638.2 6 bp overlap
HMGA2 1 dataset
ChIP WTC11 ENCFF535JLP 397 bp overlap
Irf1 1 dataset
Motif DE_24h DE_24h-Irf1_MA0050.4 11 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 234 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 679 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 246 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 290 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 158 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 232 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 269 bp overlap
KDM1A 2 datasets
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 223 bp overlap
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 271 bp overlap
MED1 3 datasets
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 444 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 278 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 267 bp overlap
MEIS1 1 dataset
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_24h DE_24h-MEIS2_MA0774.1 8 bp overlap
MYB 1 dataset
Motif DE_24h DE_24h-MYB_MA0100.4 6 bp overlap
MYOD1 1 dataset
Motif DE_24h DE_24h-MYOD1_MA0499.3 9 bp overlap
Msgn1 2 datasets
Motif DE_24h DE_24h-Msgn1_MA1524.3 10 bp overlap
Motif DE_24h DE_24h-Msgn1_MA1524.3 10 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 227 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 798 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 399 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 228 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 231 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 197 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 631 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 362 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 209 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 574 bp overlap
ChIP hESC GSE18292.NANOG.hESC 104 bp overlap
NEUROD1 2 datasets
Motif DE_24h DE_24h-NEUROD1_MA1109.2 8 bp overlap
Motif DE_24h DE_24h-NEUROD1_MA1109.2 8 bp overlap
NEUROG2 2 datasets
Motif DE_24h DE_24h-NEUROG2_MA0669.1 10 bp overlap
Motif DE_24h DE_24h-NEUROG2_MA1642.2 7 bp overlap
NFATC3 1 dataset
Motif DE_24h DE_24h-NFATC3_MA0625.3 6 bp overlap
NIPBL 1 dataset
ChIP WA09 GSE105028.NIPBL.WA09 218 bp overlap
NR2C1 1 dataset
Motif DE_24h DE_24h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_24h DE_24h-NR2C2_MA1536.2 6 bp overlap
NR2F1 1 dataset
Motif DE_24h DE_24h-NR2F1_MA1537.2 13 bp overlap
NR5A1 1 dataset
Motif DE_24h DE_24h-NR5A1_MA1540.3 12 bp overlap
Neurod2 2 datasets
Motif DE_24h DE_24h-Neurod2_MA0668.3 8 bp overlap
Motif DE_24h DE_24h-Neurod2_MA0668.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_24h DE_24h-Nfatc1_MA0624.3 6 bp overlap
Nr1H2 1 dataset
Motif DE_24h DE_24h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_24h DE_24h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_24h DE_24h-Nr1h3_MA2337.1 6 bp overlap
Nr2e3 1 dataset
Motif DE_24h DE_24h-Nr2e3_MA0164.2 6 bp overlap
PBX3 1 dataset
Motif DE_24h DE_24h-PBX3_MA1114.2 11 bp overlap
PKNOX1 1 dataset
Motif DE_24h DE_24h-PKNOX1_MA0782.3 10 bp overlap
PLAGL2 1 dataset
Motif DE_24h DE_24h-PLAGL2_MA1548.2 8 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 255 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 126 bp overlap
POU5F1 17 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 1305 bp overlap
ChIP GM23338 ENCFF333SNB 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 590 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 407 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 216 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 426 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 734 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 419 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 144 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 276 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 118 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 211 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 234 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 373 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 546 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 570 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 138 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 813 bp overlap
PRDM14 1 dataset
ChIP hESC GSE138674.PRDM14.hESC 68 bp overlap
Ptf1A 2 datasets
Motif DE_24h DE_24h-Ptf1A_MA1618.2 9 bp overlap
Motif DE_24h DE_24h-Ptf1A_MA1618.2 9 bp overlap
RAD21 5 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 339 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 237 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 436 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 351 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 73 bp overlap
RARA 1 dataset
Motif DE_24h DE_24h-RARA_MA0730.1 17 bp overlap
RARA::RXRA 1 dataset
Motif DE_24h DE_24h-RARARXRA_MA0159.1 17 bp overlap
RARA::RXRG 1 dataset
Motif DE_24h DE_24h-RARARXRG_MA1149.2 17 bp overlap
RORA 1 dataset
Motif DE_24h DE_24h-RORA_MA0071.1 10 bp overlap
Rarb 1 dataset
Motif DE_24h DE_24h-Rarb_MA0858.1 17 bp overlap
SMAD2 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 997 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 189 bp overlap
SMAD2-3 5 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 274 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 254 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 1031 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 893 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 255 bp overlap
SMAD2_3 7 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 1144 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 601 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 285 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 891 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 224 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 304 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 299 bp overlap
SMARCA4 10 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 203 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 156 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 497 bp overlap
ChIP TOV-21G_resistant GSE110448.SMARCA4.TOV-21G_resistant 227 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 104 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 189 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 559 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 538 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 335 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 299 bp overlap
SMARCB1 4 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 518 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 440 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 349 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 321 bp overlap
SMARCC1 6 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 271 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 81 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 535 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 398 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 525 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 334 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 304 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 292 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 307 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 152 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 222 bp overlap
TAL1::TCF3 1 dataset
Motif DE_24h DE_24h-TAL1TCF3_MA0091.2 10 bp overlap
TBP 1 dataset
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 223 bp overlap
TBX18 1 dataset
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
TBX19 1 dataset
Motif DE_24h DE_24h-TBX19_MA0804.2 17 bp overlap
TBXT 1 dataset
Motif DE_24h DE_24h-TBXT_MA0009.2 16 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
TCF21 1 dataset
Motif DE_24h DE_24h-TCF21_MA1568.2 10 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 255 bp overlap
TCF7L1 1 dataset
Motif DE_24h DE_24h-TCF7L1_MA1421.1 12 bp overlap
TEAD4 4 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 273 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 208 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 232 bp overlap
TFAP2C 5 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 661 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 284 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 218 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 760 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 394 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 351 bp overlap
VEZF1 1 dataset
Motif DE_24h DE_24h-VEZF1_MA1578.2 6 bp overlap
ZBTB26 1 dataset
Motif DE_24h DE_24h-ZBTB26_MA1579.2 8 bp overlap
ZIC1 1 dataset
Motif DE_24h DE_24h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_24h DE_24h-ZIC4_MA0751.2 14 bp overlap
ZIM3 1 dataset
Motif DE_24h DE_24h-ZIM3_MA1709.2 11 bp overlap
ZNF324 1 dataset
Motif DE_24h DE_24h-ZNF324_MA1977.2 14 bp overlap
ZNF418 1 dataset
Motif DE_24h DE_24h-ZNF418_MA1980.1 15 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 394 bp overlap
ZNF558 1 dataset
Motif DE_24h DE_24h-ZNF558_MA2335.1 29 bp overlap
ZNF768 1 dataset
Motif DE_24h DE_24h-ZNF768_MA1731.2 9 bp overlap
ZNF784 1 dataset
Motif DE_24h DE_24h-ZNF784_MA1717.2 8 bp overlap
Huangfu Lab · Publications · Resources · Contact