chr12 : 113,478,379 113,478,918
539 bp 73 TFs 2 linked genes
This 539 bp open chromatin element is linked to LHX5-AS1 and LHX5 and is bound by 73 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
LHX5-AS1 6.4 kb Proximal Proximity
LHX5 6.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:113,473,379 – 113,483,918
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 539 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 270 bp overlap
BRD4 3 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 239 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 267 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 188 bp overlap
CEBPD 1 dataset
ChIP HAEC_IL1b_4h GSE89970.CEBPD.HAEC_IL1b_4h 263 bp overlap
CHD1 3 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 53 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 95 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 462 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 103 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 75 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 539 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 258 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 169 bp overlap
EGR1 2 datasets
ChIP T-HESCs GSE141063.EGR1.T-HESCs 73 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 115 bp overlap
ERG 1 dataset
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 187 bp overlap
ESR1 1 dataset
ChIP Ishikawa GSE99905.ESR1.Ishikawa 207 bp overlap
ETS1 4 datasets
ChIP GM23338 ENCFF701IZH 208 bp overlap
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 66 bp overlap
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 376 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 124 bp overlap
EZH2 34 datasets
ChIP A673 ENCFF790MVL 245 bp overlap
ChIP A673 ENCFF955JRZ 284 bp overlap
ChIP A673 ENCFF955JRZ 197 bp overlap
ChIP GM23248 ENCFF404ZHM 382 bp overlap
ChIP GM23248 ENCFF404ZHM 539 bp overlap
ChIP GM23338 ENCFF613YON 282 bp overlap
ChIP GM23338 ENCFF613YON 94 bp overlap
ChIP GM23338 ENCFF886DXX 357 bp overlap
ChIP GM23338 ENCFF886DXX 248 bp overlap
ChIP H1 ENCFF232NZA 539 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 247 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 205 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 128 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 139 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 411 bp overlap
ChIP SK-N-MC ENCFF674XUJ 292 bp overlap
ChIP T98G GSE112240.EZH2.T98G 243 bp overlap
ChIP VCaP_ETOH GSE28950.EZH2.VCaP_ETOH 177 bp overlap
ChIP astrocyte ENCFF365JTP 363 bp overlap
ChIP astrocyte ENCFF365JTP 416 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 233 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 279 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 220 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 539 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 539 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 198 bp overlap
ChIP fibroblast of lung ENCFF479BAW 405 bp overlap
ChIP hepatocyte ENCFF118DKH 258 bp overlap
ChIP hepatocyte ENCFF552DZB 356 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 130 bp overlap
ChIP myotube ENCFF857GWB 471 bp overlap
ChIP myotube ENCFF857GWB 145 bp overlap
ChIP neural cell ENCFF610EPB 231 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 276 bp overlap
GATA6 3 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 302 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 389 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 328 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 307 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 104 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 58 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 318 bp overlap
JARID2 4 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 506 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 533 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 276 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 126 bp overlap
JUN 5 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 526 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 463 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 271 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 437 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 539 bp overlap
KDM4A 4 datasets
ChIP H1 ENCFF078LED 90 bp overlap
ChIP H1 ENCFF078LED 537 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 184 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 176 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 210 bp overlap
MAF 1 dataset
ChIP monocyte_INFg GSE98367.MAF.monocyte_INFg 150 bp overlap
MYC 1 dataset
ChIP SK-N-SH GSE138295.MYC.SK-N-SH 130 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 539 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 174 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 261 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 92 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 536 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 311 bp overlap
NIPBL 2 datasets
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 167 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 194 bp overlap
NME2 1 dataset
ChIP A-549_IND GSE40300.NME2.A-549_IND 62 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 445 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 298 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 313 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 351 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 539 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 539 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 478 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 539 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 223 bp overlap
RAD21 2 datasets
ChIP WA09 GSE105028.RAD21.WA09 176 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 374 bp overlap
RBBP5 3 datasets
ChIP H1 ENCFF905HFL 389 bp overlap
ChIP H1 ENCFF905HFL 187 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 158 bp overlap
REST 4 datasets
ChIP CD4 GSE49570.REST.CD4 168 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 121 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 131 bp overlap
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 197 bp overlap
RING1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 107 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 70 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 244 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 262 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 500 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 213 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 162 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 285 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 277 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 331 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 539 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 247 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 142 bp overlap
SMARCA4 2 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 181 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 539 bp overlap
SMARCB1 3 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 214 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 214 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 388 bp overlap
SMARCC1 4 datasets
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 280 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 70 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 527 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 419 bp overlap
SMC1 1 dataset
ChIP monocyte_IFNg-LPS GSE120943.SMC1.monocyte_IFNg-LPS 197 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 135 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 430 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 221 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 128 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 311 bp overlap
SS18 3 datasets
ChIP SYO-1 GSE108025.SS18.SYO-1 214 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 325 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 182 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 340 bp overlap
STAT1 1 dataset
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 154 bp overlap
STAT3 5 datasets
ChIP monocyte_IFNg GSE120943.STAT3.monocyte_IFNg 223 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.STAT3.monocyte_IFNg-LPS 225 bp overlap
ChIP monocyte_IL10 GSE120943.STAT3.monocyte_IL10 241 bp overlap
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 220 bp overlap
ChIP monocyte_resting GSE120943.STAT3.monocyte_resting 210 bp overlap
SUZ12 6 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 240 bp overlap
ChIP H1 ENCFF881NFR 539 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 514 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 333 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 225 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 218 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TCF12 3 datasets
ChIP H1 ENCFF203EBH 156 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 234 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 128 bp overlap
TEAD4 2 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 190 bp overlap
ChIP H1 ENCFF778PAX 73 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 436 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 288 bp overlap
TP53 1 dataset
ChIP WTC11 ENCFF359JCU 449 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 227 bp overlap
TRIM28 1 dataset
ChIP HCT-116 GSE72622.TRIM28.HCT-116 306 bp overlap
YY1 3 datasets
ChIP Huh-7 GSE97411.YY1.Huh-7 209 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 132 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 141 bp overlap
ZBTB43 2 datasets
ChIP WTC11 ENCFF058JUB 461 bp overlap
ChIP WTC11 ENCFF058JUB 360 bp overlap
ZNF143 1 dataset
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 184 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 228 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 79 bp overlap