chr12 : 94,260,806 94,261,454
648 bp 104 TFs 2 linked genes
This 648 bp open chromatin element is linked to PLXNC1 and CEP83 and is bound by 104 transcription factors.
Linked Genes
2 genes
Link type
Gene Expression Dist. to TSS Distance Link type
PLXNC1 112.6 kb Distal Multiome+HiCAR
CEP83 198.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:94,255,806 – 94,266,454
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
104 transcription factors
Source
Cell type
AR 1 dataset
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 142 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 424 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 648 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 339 bp overlap
Ar 1 dataset
Motif ES_0h ES_0h-Ar_MA0007.4 16 bp overlap
Arid3a 1 dataset
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
BARX1 2 datasets
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
Motif ES_0h ES_0h-BARX1_MA0875.2 6 bp overlap
BCL11A 4 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 225 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 198 bp overlap
BCL6B 3 datasets
Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap
Motif ES_0h ES_0h-BCL6B_MA0731.1 17 bp overlap
Motif ES_0h ES_0h-BCL6B_MA0731.1 17 bp overlap
BCOR 5 datasets
ChIP WA01 GSE104690.BCOR.WA01 251 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 225 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 131 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 302 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 304 bp overlap
BSX 2 datasets
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
Motif ES_0h ES_0h-BSX_MA0876.2 6 bp overlap
CBX8 2 datasets
ChIP K-562 ENCSR000ATW.CBX8.K-562 243 bp overlap
ChIP K-562 ENCSR000ATW.CBX8.K-562 210 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 425 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 325 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 244 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 173 bp overlap
CTCF 23 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 284 bp overlap
ChIP A673 ENCFF123WOM 351 bp overlap
ChIP BE2C ENCFF757SRF 316 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 196 bp overlap
Motif ES_0h ES_0h-CTCF_MA0139.2 15 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 295 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 250 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 277 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 328 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 345 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 324 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 311 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 307 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 242 bp overlap
ChIP brain ENCFF163BBN 440 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 210 bp overlap
ChIP endodermal cell ENCFF471YCZ 389 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 254 bp overlap
ChIP myotube ENCFF981UHL 251 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 157 bp overlap
ChIP neural progenitor cell ENCFF420RBO 361 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 191 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 168 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 268 bp overlap
DLX1 2 datasets
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
Motif ES_0h ES_0h-DLX1_MA0879.3 6 bp overlap
DLX6 2 datasets
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Motif ES_0h ES_0h-DLX6_MA0882.2 6 bp overlap
Dlx2 2 datasets
Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap
Motif ES_0h ES_0h-Dlx2_MA0885.3 8 bp overlap
Dlx3 2 datasets
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Motif ES_0h ES_0h-Dlx3_MA0880.2 6 bp overlap
Dlx4 2 datasets
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Motif ES_0h ES_0h-Dlx4_MA0881.2 6 bp overlap
Dlx5 2 datasets
Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap
Motif ES_0h ES_0h-Dlx5_MA1476.3 8 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 245 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 192 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 280 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 223 bp overlap
ChIP hESC GSE17917.EP300.hESC 363 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 223 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 437 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 182 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 292 bp overlap
FOXD2 1 dataset
Motif ES_0h ES_0h-FOXD2_MA0847.4 11 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 155 bp overlap
GBX2 2 datasets
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
Motif ES_0h ES_0h-GBX2_MA0890.2 6 bp overlap
HESX1 2 datasets
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
Motif ES_0h ES_0h-HESX1_MA0894.2 6 bp overlap
HNF4A 1 dataset
Motif ES_0h ES_0h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif ES_0h ES_0h-HNF4G_MA0484.3 9 bp overlap
HOXA6 2 datasets
Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap
Motif ES_0h ES_0h-HOXA6_MA1497.2 7 bp overlap
HOXA7 2 datasets
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
Motif ES_0h ES_0h-HOXA7_MA1498.3 6 bp overlap
HOXB6 2 datasets
Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap
Motif ES_0h ES_0h-HOXB6_MA1500.2 7 bp overlap
HOXB7 2 datasets
Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap
Motif ES_0h ES_0h-HOXB7_MA1501.2 7 bp overlap
HOXB8 2 datasets
Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap
Motif ES_0h ES_0h-HOXB8_MA1502.2 7 bp overlap
HOXD3 2 datasets
Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap
Motif ES_0h ES_0h-HOXD3_MA0912.2 8 bp overlap
HOXD8 2 datasets
Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap
Motif ES_0h ES_0h-HOXD8_MA0910.3 7 bp overlap
IRF4 1 dataset
ChIP OCI-Ly3 GSE56857.IRF4.OCI-Ly3 170 bp overlap
JUN 3 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 571 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 629 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 639 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 225 bp overlap
LBX2 2 datasets
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
Motif ES_0h ES_0h-LBX2_MA0699.2 6 bp overlap
LEF1 1 dataset
ChIP hESC GSE64758.LEF1.hESC 246 bp overlap
LHX2 2 datasets
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
Motif ES_0h ES_0h-LHX2_MA0700.3 6 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 208 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 171 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 176 bp overlap
ChIP WTC11 ENCFF223QFY 272 bp overlap
MLLT1 2 datasets
ChIP GM12878 ENCFF995GXC 286 bp overlap
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 257 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 194 bp overlap
MSX1 2 datasets
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
Motif ES_0h ES_0h-MSX1_MA0666.3 6 bp overlap
MSX2 2 datasets
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
Motif ES_0h ES_0h-MSX2_MA0708.3 6 bp overlap
Msx3 2 datasets
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
Motif ES_0h ES_0h-Msx3_MA0709.2 6 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 310 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 234 bp overlap
ChIP H1 ENCFF747ZPQ 78 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 648 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 316 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 227 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 643 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 575 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 537 bp overlap
ChIP hESC GSE20650.NANOG.hESC 228 bp overlap
ChIP hESC GSE18292.NANOG.hESC 221 bp overlap
NCOR2 1 dataset
ChIP LS180_125 GSE39277.NCOR2.LS180_125 94 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 218 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 234 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 307 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 307 bp overlap
NR3C1 1 dataset
Motif ES_0h ES_0h-NR3C1_MA0113.4 15 bp overlap
NR3C2 1 dataset
Motif ES_0h ES_0h-NR3C2_MA0727.2 15 bp overlap
Nobox 2 datasets
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
Motif ES_0h ES_0h-Nobox_MA0125.2 6 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 320 bp overlap
PGR 1 dataset
Motif ES_0h ES_0h-PGR_MA2327.1 9 bp overlap
POLR2A 1 dataset
ChIP esophagus muscularis mucosa ENCFF759BBR 181 bp overlap
POU5F1 13 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 452 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 648 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 385 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 648 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 258 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 288 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 253 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 242 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 648 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 457 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 460 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 272 bp overlap
Pgr 1 dataset
Motif ES_0h ES_0h-Pgr_MA2323.1 17 bp overlap
RAD21 6 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 484 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 375 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 360 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 309 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 215 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 286 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 339 bp overlap
RAX 2 datasets
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
Motif ES_0h ES_0h-RAX_MA0718.2 6 bp overlap
REST 2 datasets
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
Motif ES_0h ES_0h-REST_MA0138.3 20 bp overlap
RFX4 2 datasets
Motif DE_12h DE_12h-RFX4_MA0799.3 13 bp overlap
Motif ES_0h ES_0h-RFX4_MA0799.3 13 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 274 bp overlap
SIN3A 1 dataset
ChIP H1 ENCFF042ZSL 407 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 309 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 289 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 383 bp overlap
SMARCA4 4 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 253 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 366 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 556 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 313 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 616 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 360 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 248 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 605 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 376 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 289 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 157 bp overlap
SOX10 1 dataset
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 5 datasets
ChIP H9 GSE46837.SOX2.H9 238 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 343 bp overlap
ChIP hESC GSE69479.SOX2.hESC 229 bp overlap
ChIP hESC GSE18292.SOX2.hESC 221 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 359 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 318 bp overlap
SOX4 1 dataset
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 254 bp overlap
SP4 2 datasets
ChIP H1 ENCFF473YOB 459 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 184 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
STAG1 1 dataset
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 137 bp overlap
Sox11 1 dataset
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 237 bp overlap
TBP 1 dataset
ChIP hESC_2h GSE122298.TBP.hESC_2h 198 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 202 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 326 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TEAD4 2 datasets
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 294 bp overlap
Wt1 2 datasets
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 222 bp overlap
ZNF184 2 datasets
ChIP WTC11 ENCFF352POG 414 bp overlap
ChIP WTC11 ENCFF352POG 471 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 204 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 167 bp overlap
ZNF582 2 datasets
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
Motif ES_0h ES_0h-ZNF582_MA1983.2 19 bp overlap
ZNF85 2 datasets
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
Motif ES_0h ES_0h-ZNF85_MA1720.2 12 bp overlap