chr12 : 69,171,748 69,172,291
543 bp 92 TFs 3 linked genes
This 543 bp open chromatin element is linked to CPSF6, YEATS4, and FRS2 and is bound by 92 transcription factors.
Linked Genes
3 genes
Link type
Gene Expression Dist. to TSS Distance Link type
CPSF6 67.5 kb Distal Multiome+HiCAR
YEATS4 187.7 kb Distal Multiome
FRS2 298.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:69,166,748 – 69,177,291
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
92 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 157 bp overlap
BCL6 1 dataset
Motif DE_48h DE_48h-BCL6_MA0463.3 13 bp overlap
BCL6B 1 dataset
Motif DE_48h DE_48h-BCL6B_MA0731.1 17 bp overlap
BRD4 1 dataset
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 183 bp overlap
CTCF 1 dataset
Motif DE_48h DE_48h-CTCF_MA0139.2 15 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 178 bp overlap
EOMES 2 datasets
Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 233 bp overlap
ESR1 1 dataset
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 318 bp overlap
ESRRB 1 dataset
Motif DE_36h DE_36h-ESRRB_MA0141.4 10 bp overlap
ETV1 1 dataset
Motif DE_36h DE_36h-ETV1_MA0761.3 9 bp overlap
FEZF2 2 datasets
Motif DE_36h DE_36h-FEZF2_MA2341.1 8 bp overlap
Motif DE_48h DE_48h-FEZF2_MA2341.1 8 bp overlap
FOXA1 21 datasets
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 123 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 99 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 102 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 154 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 131 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 83 bp overlap
ChIP MCF-7 GSE140185.FOXA1.MCF-7 113 bp overlap
ChIP MCF-7 GSE80808.FOXA1.MCF-7 60 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 57 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 169 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 181 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 142 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 170 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 98 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 138 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 83 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 83 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 64 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 138 bp overlap
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 330 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 77 bp overlap
FOXA2 7 datasets
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 82 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 194 bp overlap
ChIP DE DE-FOXA2-1 316 bp overlap
ChIP DE DE-FOXA2-2 289 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 150 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 270 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 99 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 301 bp overlap
ChIP DE DE-GATA4-2 392 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 389 bp overlap
ChIP DE DE-GATA6-2 376 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 229 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 331 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 263 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 377 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 335 bp overlap
HIC2 1 dataset
Motif DE_36h DE_36h-HIC2_MA0738.2 6 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 190 bp overlap
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 190 bp overlap
IKZF2 1 dataset
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_36h DE_36h-Ikzf3_MA1992.2 9 bp overlap
KLF6 1 dataset
Motif DE_48h DE_48h-KLF6_MA1517.2 9 bp overlap
MED1 1 dataset
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 304 bp overlap
MEF2A 1 dataset
Motif DE_48h DE_48h-MEF2A_MA0052.5 10 bp overlap
MEF2C 1 dataset
Motif DE_48h DE_48h-MEF2C_MA0497.2 11 bp overlap
MGA 1 dataset
Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap
MTF1 2 datasets
Motif DE_36h DE_36h-MTF1_MA0863.1 14 bp overlap
Motif DE_48h DE_48h-MTF1_MA0863.1 14 bp overlap
NFYB 2 datasets
Motif DE_36h DE_36h-NFYB_MA0502.3 9 bp overlap
Motif DE_48h DE_48h-NFYB_MA0502.3 9 bp overlap
NOTCH1 1 dataset
ChIP GSC8-11_dasatinib GSE74557.NOTCH1.GSC8-11_dasatinib 364 bp overlap
NR5A1 1 dataset
Motif DE_36h DE_36h-NR5A1_MA1540.3 12 bp overlap
NR6A1 1 dataset
Motif DE_36h DE_36h-NR6A1_MA1541.2 14 bp overlap
Nr5A2 1 dataset
Motif DE_36h DE_36h-Nr5A2_MA0505.3 9 bp overlap
PATZ1 1 dataset
Motif DE_36h DE_36h-PATZ1_MA1961.2 11 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 252 bp overlap
PRDM1 2 datasets
Motif DE_36h DE_36h-PRDM1_MA0508.4 7 bp overlap
Motif DE_48h DE_48h-PRDM1_MA0508.4 7 bp overlap
Prdm5 3 datasets
Motif DE_36h DE_36h-Prdm5_MA1999.2 11 bp overlap
Motif DE_48h DE_48h-Prdm5_MA1999.2 11 bp overlap
Motif DE_48h DE_48h-Prdm5_MA1999.2 11 bp overlap
RARA 1 dataset
Motif DE_36h DE_36h-RARA_MA0730.1 17 bp overlap
REST 1 dataset
Motif DE_48h DE_48h-REST_MA0138.3 20 bp overlap
RNF2 1 dataset
ChIP K-562 ENCSR820GND.RNF2.K-562 366 bp overlap
RUNX3 2 datasets
Motif DE_36h DE_36h-RUNX3_MA0684.3 8 bp overlap
Motif DE_48h DE_48h-RUNX3_MA0684.3 8 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 188 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 511 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 465 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 389 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 417 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 412 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 288 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 350 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 303 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 325 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 259 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 225 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 241 bp overlap
SOX14 1 dataset
Motif DE_48h DE_48h-SOX14_MA1562.2 9 bp overlap
SOX15 1 dataset
Motif DE_48h DE_48h-SOX15_MA1152.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 339 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 374 bp overlap
SOX18 1 dataset
Motif DE_48h DE_48h-SOX18_MA1563.2 8 bp overlap
SOX21 2 datasets
Motif DE_36h DE_36h-SOX21_MA0866.1 15 bp overlap
Motif DE_48h DE_48h-SOX21_MA0866.1 15 bp overlap
SOX8 1 dataset
Motif DE_48h DE_48h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif DE_48h DE_48h-SOX9_MA0077.2 8 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Sox1 2 datasets
Motif DE_36h DE_36h-Sox1_MA0870.1 15 bp overlap
Motif DE_48h DE_48h-Sox1_MA0870.1 15 bp overlap
Sox17 1 dataset
Motif DE_48h DE_48h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif DE_48h DE_48h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_48h DE_48h-Sox7_MA2095.1 10 bp overlap
Stat5a 1 dataset
Motif DE_48h DE_48h-Stat5a_MA1624.2 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 236 bp overlap
TBR1 1 dataset
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_36h DE_36h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_36h DE_36h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_36h DE_36h-TBX18_MA1565.2 9 bp overlap
TBX19 1 dataset
Motif DE_36h DE_36h-TBX19_MA0804.2 17 bp overlap
TBX2 1 dataset
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_36h DE_36h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_36h DE_36h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_36h DE_36h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_36h DE_36h-TBX5_MA0807.1 8 bp overlap
TFAP2A 1 dataset
Motif DE_36h DE_36h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 2 datasets
Motif DE_36h DE_36h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_36h DE_36h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 1 dataset
Motif DE_36h DE_36h-TFAP2C_MA0524.3 11 bp overlap
Tbx6 1 dataset
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 247 bp overlap
ZFP14 1 dataset
Motif DE_36h DE_36h-ZFP14_MA1972.1 15 bp overlap
ZNF175 1 dataset
Motif DE_36h DE_36h-ZNF175_MA2332.1 9 bp overlap
ZNF184 1 dataset
Motif DE_48h DE_48h-ZNF184_MA2120.1 13 bp overlap
ZNF213 2 datasets
Motif DE_36h DE_36h-ZNF213_MA2121.1 12 bp overlap
Motif DE_48h DE_48h-ZNF213_MA2121.1 12 bp overlap
ZNF281 1 dataset
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
ZNF418 1 dataset
Motif DE_48h DE_48h-ZNF418_MA1980.1 15 bp overlap
ZNF454 1 dataset
Motif DE_36h DE_36h-ZNF454_MA1712.2 17 bp overlap
ZNF667 2 datasets
Motif DE_36h DE_36h-ZNF667_MA1984.2 11 bp overlap
Motif DE_36h DE_36h-ZNF667_MA1984.2 11 bp overlap
ZNF75D 1 dataset
Motif DE_36h DE_36h-ZNF75D_MA1601.2 12 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 269 bp overlap
ZSCAN4 1 dataset
Motif DE_48h DE_48h-ZSCAN4_MA1155.1 15 bp overlap