chr12 : 42,125,392 – 42,126,418

1,026 bp 84 TFs 0 linked genes

This 1.0 kb open chromatin element has no linked target genes and is bound by 84 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

84 transcription factors

AR 2 datasets

ChIP LNCaP GSE80256.AR.LNCaP 149 bp overlap

ChIP LTAD_EtOH GSE94577.AR.LTAD_EtOH 145 bp overlap

Ahr::Arnt 1 dataset

Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap

BCL6 1 dataset

ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 255 bp overlap

Bach1::Mafk 1 dataset

Motif DE_12h DE_12h-Bach1Mafk_MA0591.2 12 bp overlap

CLOCK 1 dataset

ChIP BA10_2 GSE96659.CLOCK.BA10_2 156 bp overlap

CTNNB1 1 dataset

ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 265 bp overlap

Crx 1 dataset

Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap

ESR1 1 dataset

ChIP endometrioid-adenocarcinoma_tumor_3 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_3 209 bp overlap

EVI1 1 dataset

ChIP SKH1 GSE87283.EVI1.SKH1 170 bp overlap

FEZF1 3 datasets

ChIP HEK293 ENCFF528YED 433 bp overlap

ChIP HEK293 GSE76494.FEZF1.HEK293 141 bp overlap

ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 303 bp overlap

FLI1 1 dataset

ChIP SKNO-1 GSE23730.FLI1.SKNO-1 193 bp overlap

FOXK2 1 dataset

ChIP K562 ENCFF851PFH 87 bp overlap

GATA6 5 datasets

ChIP DE_D1 S09-DE-d1-GATA6-exp1 234 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 391 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 327 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 345 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 371 bp overlap

GLIS1 2 datasets

ChIP HEK293 ENCFF299RSE 457 bp overlap

ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 247 bp overlap

GRHL2 1 dataset

ChIP T-47D GSE99680.GRHL2.T-47D 258 bp overlap

GSC 1 dataset

Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap

HAND2 2 datasets

ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 353 bp overlap

ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 285 bp overlap

HNF4A 1 dataset

ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 201 bp overlap

Hand1 1 dataset

Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap

Hnf1A 1 dataset

Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap

JUN 2 datasets

ChIP DE_D1 S40-DE-d1-JUN-exp2 517 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 363 bp overlap

KDM1A 1 dataset

ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 231 bp overlap

KLF1 4 datasets

Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap

ChIP HEK293 ENCFF159QSW 232 bp overlap

ChIP HEK293 ENCSR859BMR.KLF1.HEK293 247 bp overlap

ChIP HEK293 GSE76494.KLF1.HEK293 142 bp overlap

KLF10 1 dataset

Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap

KLF11 1 dataset

Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap

KLF13 1 dataset

Motif DE_12h DE_12h-KLF13_MA0657.2 17 bp overlap

KLF16 1 dataset

Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap

KLF2 1 dataset

Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap

KLF3 1 dataset

Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap

KLF4 1 dataset

Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap

KLF5 1 dataset

Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap

KLF6 1 dataset

Motif DE_12h DE_12h-KLF6_MA1517.2 9 bp overlap

KLF9 2 datasets

Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap

ChIP GBM1A GSE62211.KLF9.GBM1A 102 bp overlap

Lef1 1 dataset

Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap

MAF::NFE2 1 dataset

Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap

MAFG::NFE2L1 1 dataset

Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap

MAFK 1 dataset

Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap

MAZ 1 dataset

Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap

NANOG 5 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 109 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 658 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 240 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 241 bp overlap

ChIP hESC GSE20650.NANOG.hESC 121 bp overlap

OSR2 3 datasets

ChIP HEK293 ENCFF875BDB 277 bp overlap

ChIP HEK293 ENCSR324LTM.OSR2.HEK293 959 bp overlap

ChIP HEK293 GSE76494.OSR2.HEK293 186 bp overlap

OTX1 1 dataset

Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap

OTX2 1 dataset

Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap

PBX2 2 datasets

ChIP K-562 ENCSR263DFP.PBX2.K-562 259 bp overlap

ChIP K562 ENCFF286KMN 417 bp overlap

PHIP 1 dataset

ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 310 bp overlap

PHOX2B 1 dataset

ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 240 bp overlap

PITX1 1 dataset

Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap

PITX3 1 dataset

Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap

POU5F1 1 dataset

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 212 bp overlap

PRDM6 2 datasets

ChIP HEK293 ENCFF283AJL 445 bp overlap

ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 256 bp overlap

Pparg::Rxra 1 dataset

Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap

RHOXF1 1 dataset

Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap

SCRT1 1 dataset

ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 152 bp overlap

SCRT2 1 dataset

ChIP HEK293 ENCFF711QQB 54 bp overlap

SIX2 2 datasets

ChIP HEK GSE73865.SIX2.HEK 207 bp overlap

ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 186 bp overlap

SMAD2 1 dataset

Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 486 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 622 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 513 bp overlap

SMAD2_3 4 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 501 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 494 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 578 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 418 bp overlap

SMARCA4 2 datasets

ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 56 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 156 bp overlap

SMARCC1 2 datasets

ChIP DE_D1 S10-DE-d1-BAF155-exp1 267 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 147 bp overlap

SP3 1 dataset

Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap

SP8 1 dataset

Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap

SPI1 3 datasets

ChIP DC_LPS GSE123347.SPI1.DC_LPS 109 bp overlap

ChIP K-562 GSE70482.SPI1.K-562 223 bp overlap

ChIP K-562 ENCSR000BGW.SPI1.K-562 151 bp overlap

TBX21 1 dataset

ChIP GM12878 ENCSR739IHN.TBX21.GM12878 369 bp overlap

TCF7 2 datasets

Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap

ChIP GM12878 ENCSR501DKS.TCF7.GM12878 141 bp overlap

TCF7L1 1 dataset

Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap

TCF7L2 2 datasets

ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 176 bp overlap

Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap

TP53 1 dataset

ChIP H9 GSE39912.TP53.H9 178 bp overlap

ZBTB17 1 dataset

ChIP HEK293 ENCFF865LIO 429 bp overlap

ZFP64 1 dataset

ChIP HEK293 GSE76494.ZFP64.HEK293 72 bp overlap

ZIC2 1 dataset

ChIP HEK293 ENCFF033NQQ 171 bp overlap

ZKSCAN5 2 datasets

Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap

ChIP HEK293T GSE78099.ZKSCAN5.HEK293T 173 bp overlap

ZNF135 1 dataset

Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap

ZNF148 1 dataset

Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap

ZNF18 2 datasets

ChIP HEK293 ENCFF066NGR 441 bp overlap

ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 300 bp overlap

ZNF184 1 dataset

Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap

ZNF189 2 datasets

ChIP HEK293 ENCFF638TIB 501 bp overlap

ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 245 bp overlap

ZNF257 1 dataset

Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap

ZNF362 1 dataset

ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 391 bp overlap

ZNF460 1 dataset

Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap

ZNF677 1 dataset

Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap

ZNF770 1 dataset

ChIP HEK293 GSE76494.ZNF770.HEK293 148 bp overlap

ZNF823 1 dataset

ChIP HEK293T GSE78099.ZNF823.HEK293T 84 bp overlap

Zfp809 1 dataset

Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap