chr12 : 24,560,946 – 24,561,279
333 bp 65 TFs 1 linked gene
This 333 bp open chromatin element is linked to SOX5 and is bound by 65 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SOX5 1.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:24,555,946 – 24,566,279
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
ARID3A 1 dataset
ChIP HepG2 ENCFF122GLS 63 bp overlap
ASH2L 1 dataset
ChIP VCaP_R1881 GSE60841.ASH2L.VCaP_R1881 81 bp overlap
BMI1 1 dataset
ChIP MCF-7 ENCSR966YYJ.BMI1.MCF-7 206 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 274 bp overlap
BRD4 5 datasets
ChIP CHL-1_BAY123897 GSE95585.BRD4.CHL-1_BAY123897 191 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 236 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 288 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 270 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 333 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 279 bp overlap
CBX2 2 datasets
ChIP HepG2 ENCFF838BNI 188 bp overlap
ChIP K562 ENCFF578AQI 333 bp overlap
CBX8 2 datasets
ChIP A-549 ENCSR616MOB.CBX8.A-549 251 bp overlap
ChIP K562 ENCFF485TBL 333 bp overlap
CDK9 2 datasets
ChIP A-375_DMSO GSE57431.CDK9.A-375_DMSO 188 bp overlap
ChIP A-375_DMSO GSE68052.CDK9.A-375_DMSO 240 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 267 bp overlap
CHD4 1 dataset
ChIP macrophage GSE136216.CHD4.macrophage 323 bp overlap
CTCF 14 datasets
ChIP A673 ENCFF123WOM 320 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 185 bp overlap
ChIP Loucy ENCFF359TVQ 303 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 221 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 270 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 306 bp overlap
ChIP Panc1 ENCFF056JQX 333 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 202 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 145 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 218 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 229 bp overlap
ChIP chondrocyte ENCFF134ORZ 194 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 279 bp overlap
ChIP osteocyte ENCFF929FPD 333 bp overlap
DUX4 2 datasets
ChIP HEK293 GSE75791.DUX4.HEK293 236 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 82 bp overlap
EBF1 2 datasets
ChIP ASC GSE54889.EBF1.ASC 211 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 333 bp overlap
EZH2 4 datasets
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 319 bp overlap
ChIP Karpas-422_CPI360-D4 GSE134136.EZH2.Karpas-422_CPI360-D4 176 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 333 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 333 bp overlap
EZH2_phosphoT487 3 datasets
ChIP OCI-Ly7 ENCSR565XSL.EZH2_phosphoT487.OCI-Ly7 118 bp overlap
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 236 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 57 bp overlap
FOXA1 8 datasets
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 73 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 67 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 68 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 135 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 333 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 325 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 109 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 91 bp overlap
FOXA2 2 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 81 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 156 bp overlap
GABPA 1 dataset
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 184 bp overlap
GATA2 1 dataset
ChIP SH-SY5Y ENCFF485YIB 85 bp overlap
GATA6 1 dataset
ChIP HUG1N GSE51936.GATA6.HUG1N 180 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 239 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 199 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 108 bp overlap
JUND 1 dataset
ChIP liver ENCFF557PGE 58 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 101 bp overlap
KMT2A 4 datasets
ChIP HEK293T_C-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_C-term_shCtrl_TASP1-KO 298 bp overlap
ChIP HEK293T_N-term GSE90762.KMT2A.HEK293T_N-term 254 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 159 bp overlap
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 333 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 163 bp overlap
MTF2 2 datasets
ChIP DU145_CTR GSE135623.MTF2.DU145_CTR 333 bp overlap
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 251 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 134 bp overlap
MYC 1 dataset
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 139 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 300 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 126 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 235 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 269 bp overlap
NCOA1 1 dataset
ChIP MCF-7 ERP000901.NCOA1.MCF-7 137 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 265 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 161 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 333 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 123 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 201 bp overlap
PHF19 1 dataset
ChIP DU145_SH4 GSE135623.PHF19.DU145_SH4 151 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 211 bp overlap
POU2F1 3 datasets
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 210 bp overlap
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 52 bp overlap
ChIP T-47D GSE148277.POU2F1.T-47D 242 bp overlap
RAD21 2 datasets
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 269 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 160 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 135 bp overlap
REST 2 datasets
ChIP liver ENCSR893QWP.REST.liver 150 bp overlap
ChIP liver ENCSR867WPH.REST.liver 66 bp overlap
RING1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 205 bp overlap
RNF2 5 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 177 bp overlap
ChIP Hep-G2 ENCSR523XCR.RNF2.Hep-G2 77 bp overlap
ChIP K-562 ENCSR820GND.RNF2.K-562 214 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 166 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 135 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 314 bp overlap
SMARCA4 3 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 250 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 216 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 152 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 193 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 108 bp overlap
SNAI2 2 datasets
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 196 bp overlap
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 255 bp overlap
SPI1 1 dataset
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 94 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 119 bp overlap
STAT3 1 dataset
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 301 bp overlap
SUZ12 3 datasets
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 289 bp overlap
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 227 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.SUZ12.Karpas-422_CPI360-D8 109 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 131 bp overlap
TP53 1 dataset
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 207 bp overlap
YY1 3 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 206 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 286 bp overlap
ChIP liver ENCFF515BWJ 111 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCFF524ADK 185 bp overlap
ZBTB48 2 datasets
ChIP HEK293 ENCFF809BPK 333 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 327 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 333 bp overlap
ZMYND8 1 dataset
ChIP MDA-MB-231 GSE108833.ZMYND8.MDA-MB-231 68 bp overlap
ZNF189 1 dataset
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 311 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 273 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 333 bp overlap
ZNF561 3 datasets
ChIP HEK293 ENCFF399XKF 182 bp overlap
ChIP HEK293 ENCFF399XKF 92 bp overlap
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 211 bp overlap
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