chr12 : 13,799,351 – 13,800,064
713 bp 61 TFs 1 linked gene
This 713 bp open chromatin element is linked to GRIN2B and is bound by 61 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GRIN2B 181.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:13,794,351 – 13,805,064
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
AR 1 dataset
ChIP 22Rv1_pLKO GSE109748.AR.22Rv1_pLKO 137 bp overlap
ARNTL 3 datasets
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 175 bp overlap
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 132 bp overlap
ChIP U2OS_DMSO GSE85096.ARNTL.U2OS_DMSO 236 bp overlap
ASCL1 1 dataset
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 119 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 713 bp overlap
ChIP H1 ENCFF399KAM 514 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 536 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 263 bp overlap
BAP1 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 557 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 85 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 373 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 216 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 164 bp overlap
BRD4 4 datasets
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 122 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 286 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 419 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 618 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 541 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 626 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 125 bp overlap
CRY2 1 dataset
ChIP U2OS_DMSO GSE130507.CRY2.U2OS_DMSO 289 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 514 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 375 bp overlap
CTCF 1 dataset
ChIP neural ENCSR822CEA.CTCF.neural 298 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 159 bp overlap
EP300 2 datasets
ChIP WA01 ENCSR000BKK.EP300.WA01 160 bp overlap
ChIP WA01 ENCSR000AUQ.EP300.WA01 170 bp overlap
ESR1 1 dataset
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 224 bp overlap
EZH2 2 datasets
ChIP LNCaP GSE39459.EZH2.LNCaP 195 bp overlap
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 71 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 244 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 215 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 517 bp overlap
GRHL2 1 dataset
Motif ES_0h ES_0h-GRHL2_MA1105.3 8 bp overlap
GTF2I 1 dataset
ChIP WTC11 ENCFF255XXZ 345 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 161 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 370 bp overlap
Hic1 1 dataset
Motif ES_0h ES_0h-Hic1_MA0739.2 8 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 248 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 612 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 577 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 612 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 366 bp overlap
MYOD1 1 dataset
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 76 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 122 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 713 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 496 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 361 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 713 bp overlap
ChIP hESC GSE20650.NANOG.hESC 519 bp overlap
ChIP hESC GSE18292.NANOG.hESC 331 bp overlap
NIPBL 1 dataset
ChIP hESC GSE64758.NIPBL.hESC 514 bp overlap
POLR2A 2 datasets
ChIP H1 ENCFF833NJP 403 bp overlap
ChIP neural cell ENCFF604SPB 189 bp overlap
POU5F1 5 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 675 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 298 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 688 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 193 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 202 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 599 bp overlap
RNF2 1 dataset
ChIP WA01 GSE104690.RNF2.WA01 274 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 247 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 200 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF042ZSL 192 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 177 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 181 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 105 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 432 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 362 bp overlap
SMAD2_3 2 datasets
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 350 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 348 bp overlap
SMAD3 4 datasets
ChIP BG03 GSE21614.SMAD3.BG03 263 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 370 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 329 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 282 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 244 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 402 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 193 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 426 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 526 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 380 bp overlap
SOX2 3 datasets
ChIP H9 GSE46837.SOX2.H9 312 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 541 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 544 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 546 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 246 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 672 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TERF2 1 dataset
ChIP LCL GSE55053.TERF2.LCL 96 bp overlap
TP53 2 datasets
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 216 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 231 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 380 bp overlap
ZNF114 2 datasets
ChIP GM23338 ENCFF631OSW 357 bp overlap
ChIP GM23338 ENCSR555KFE.ZNF114.GM23338 421 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 459 bp overlap
ZNF263 1 dataset
ChIP WTC11 ENCFF893RTM 437 bp overlap
ZNF283 1 dataset
ChIP HEK293T GSE78099.ZNF283.HEK293T 157 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 676 bp overlap
ZNF85 1 dataset
Motif ES_0h ES_0h-ZNF85_MA1720.2 12 bp overlap
Znf423 1 dataset
Motif ES_0h ES_0h-Znf423_MA0116.1 15 bp overlap
Huangfu Lab · Publications · Resources · Contact