chr12 : 5,429,658 5,430,402
744 bp 66 TFs 2 linked genes
This 744 bp open chromatin element is linked to NTF3 and ENSG00000256417 and is bound by 66 transcription factors.
Linked Genes
2 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
NTF3 1.7 kb Proximal Proximity
ENSG00000256417 139.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:5,424,658 – 5,435,402
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
ARID4B 1 dataset
ChIP WTC11 ENCFF441HDK 457 bp overlap
ASH2L 2 datasets
ChIP WA01 ENCSR850KIP.ASH2L.WA01 567 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 124 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 218 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 180 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 518 bp overlap
ChIP HUES-64 GSE104059.BRD1.HUES-64 75 bp overlap
BRD4 3 datasets
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 136 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 222 bp overlap
ChIP thyroid-cancer GSE114068.BRD4.thyroid-cancer 280 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 152 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 331 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 152 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 323 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 212 bp overlap
CTCF 1 dataset
ChIP H1 ENCFF414GZI 217 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 126 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 389 bp overlap
ESR1 1 dataset
ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 124 bp overlap
ETS1 3 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 543 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 102 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 339 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 437 bp overlap
EZH2 18 datasets
ChIP A673 ENCFF790MVL 473 bp overlap
ChIP A673 ENCFF790MVL 637 bp overlap
ChIP A673 ENCFF955JRZ 473 bp overlap
ChIP A673 ENCFF955JRZ 621 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 353 bp overlap
ChIP GM23338 ENCFF613YON 385 bp overlap
ChIP H1 ENCFF232NZA 331 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 78 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 135 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 223 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 271 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 694 bp overlap
ChIP astrocyte ENCFF365JTP 496 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 125 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 395 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 439 bp overlap
ChIP keratinocyte ENCFF070STK 355 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 274 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 484 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-2 505 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 401 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-2 368 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 337 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 284 bp overlap
HDAC2 6 datasets
ChIP H1 ENCFF353UJQ 601 bp overlap
ChIP H1 ENCFF353UJQ 269 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 279 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 182 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 50 bp overlap
JARID2 3 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 251 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 313 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 300 bp overlap
JUN 2 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 291 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 374 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 306 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 351 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 112 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 145 bp overlap
ChIP H1 ENCFF914VQY 88 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 184 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 609 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 310 bp overlap
PHIP 2 datasets
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 73 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 280 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 451 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 556 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 523 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 241 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 210 bp overlap
RBBP5 2 datasets
ChIP WA01 ENCSR000AQC.RBBP5.WA01 377 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 153 bp overlap
RELB 1 dataset
ChIP L1236 GSE63736.RELB.L1236 91 bp overlap
RNF2 1 dataset
ChIP HUES-64 GSE104059.RNF2.HUES-64 458 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 325 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 404 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 301 bp overlap
SCRT2 2 datasets
ChIP HEK293 ENCFF711QQB 429 bp overlap
ChIP HEK293 ENCFF711QQB 521 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 283 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 114 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 547 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 513 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 400 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 388 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 322 bp overlap
SMAD2_3 3 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 488 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 397 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 423 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 445 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 207 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 284 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 228 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 334 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 295 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 393 bp overlap
SP4 3 datasets
ChIP H1 ENCFF473YOB 597 bp overlap
ChIP H1 ENCFF473YOB 331 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 245 bp overlap
SRF 2 datasets
ChIP Ishikawa ENCFF992QXM 255 bp overlap
ChIP Ishikawa ENCSR000BTD.SRF.Ishikawa 154 bp overlap
SUZ12 3 datasets
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 535 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 126 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 639 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 245 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 441 bp overlap
TP63 2 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 232 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 590 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 397 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 443 bp overlap
ZNF143 2 datasets
ChIP WA01 ENCSR000EBW.ZNF143.WA01 122 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 188 bp overlap
ZNF263 3 datasets
ChIP HEK293 ENCFF336CWQ 302 bp overlap
ChIP HEK293 ENCFF336CWQ 348 bp overlap
ChIP WTC11 ENCFF893RTM 313 bp overlap
ZNF331 2 datasets
ChIP GM23338 ENCSR918LRB.ZNF331.GM23338 145 bp overlap
ChIP HEK293 GSE76494.ZNF331.HEK293 189 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 135 bp overlap