chr12 : 1,489,149 1,489,771
622 bp 84 TFs 4 linked genes
This 622 bp open chromatin element is linked to 4 target genes and is bound by 84 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
WNT5B 40.5 kb Distal Multiome
FBXL14 105.2 kb Distal Multiome
ADIPOR2 201.7 kb Distal Multiome
ERC1 498.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:1,484,149 – 1,494,771
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 94 bp overlap
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 185 bp overlap
ARNTL 3 datasets
ChIP U2OS GSE130602.ARNTL.U2OS 95 bp overlap
ChIP U2OS GSE44236.ARNTL.U2OS 101 bp overlap
ChIP U2OS_DMSO GSE130506.ARNTL.U2OS_DMSO 95 bp overlap
BHLHE40 5 datasets
ChIP GM12878 ENCFF010ZUU 90 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 90 bp overlap
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 130 bp overlap
ChIP IMR-90 ENCFF312JYK 84 bp overlap
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 75 bp overlap
BRCA1 1 dataset
ChIP MCF-10A GSE40591.BRCA1.MCF-10A 157 bp overlap
BRD2 2 datasets
ChIP HUVEC-C GSE60171.BRD2.HUVEC-C 195 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD2.K-562_DMSO-IFNG 250 bp overlap
BRD3 2 datasets
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 157 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 84 bp overlap
BRD4 17 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 160 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 210 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 145 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 74 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 183 bp overlap
ChIP MV4-11_DMSO GSE71776.BRD4.MV4-11_DMSO 201 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 220 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 268 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 142 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 110 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 622 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 381 bp overlap
ChIP T-cell_DMSO GSE138084.BRD4.T-cell_DMSO 327 bp overlap
ChIP T-cell_iBET GSE138084.BRD4.T-cell_iBET 91 bp overlap
ChIP T-cell_iBET-BD1 GSE138084.BRD4.T-cell_iBET-BD1 151 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 262 bp overlap
CEBPA 3 datasets
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 83 bp overlap
ChIP MV4-11 GSE88746.CEBPA.MV4-11 218 bp overlap
ChIP U-937 ERP008568.CEBPA.U-937 129 bp overlap
CEBPB 1 dataset
ChIP MV4-11 GSE88746.CEBPB.MV4-11 220 bp overlap
CTCF 4 datasets
ChIP AG04449 ENCFF248MBD 93 bp overlap
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 232 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 185 bp overlap
ChIP fibroblast_SKIN_LEG ENCSR000DPG.CTCF.fibroblast_SKIN_LEG 88 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 216 bp overlap
ChIP BLaER1 ENCFF364PUR 108 bp overlap
DDX5 1 dataset
ChIP HeLa GSE24126.DDX5.HeLa 101 bp overlap
DUX4 1 dataset
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
EGR1 2 datasets
ChIP K-562 ENCSR211LTF.EGR1.K-562 101 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 51 bp overlap
EP300 1 dataset
ChIP AML GSE131939.EP300.AML 105 bp overlap
ERG 5 datasets
ChIP SEM GSE117864.ERG.SEM 207 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 141 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 265 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 76 bp overlap
ChIP VCaP GSE49091.ERG.VCaP 53 bp overlap
ESR1 2 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 259 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 70 bp overlap
EVI1 1 dataset
ChIP SKH1 GSE87283.EVI1.SKH1 153 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 64 bp overlap
FLI1 8 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 154 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 117 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 169 bp overlap
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 128 bp overlap
ChIP SEM GSE117864.FLI1.SEM 59 bp overlap
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 251 bp overlap
ChIP UAE GSE23730.FLI1.UAE 133 bp overlap
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 144 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 186 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 562 bp overlap
ChIP DE DE-FOXA2-2 541 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 117 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 446 bp overlap
ChIP DE DE-GATA4-2 531 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 434 bp overlap
ChIP DE DE-GATA6-2 564 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 460 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 436 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 534 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 464 bp overlap
Gli1 1 dataset
Motif DE_36h DE_36h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_36h DE_36h-Gli2_MA0734.4 9 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 134 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 178 bp overlap
JMJD1C 3 datasets
ChIP HL-60 GSE63484.JMJD1C.HL-60 124 bp overlap
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 201 bp overlap
ChIP THP-1 GSE63484.JMJD1C.THP-1 96 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 80 bp overlap
KMT2A 1 dataset
ChIP OCI-AML-3_DMSO GSE129636.KMT2A.OCI-AML-3_DMSO 93 bp overlap
KMT2B 2 datasets
ChIP AML GSE112074.KMT2B.AML 79 bp overlap
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 112 bp overlap
LDB1 2 datasets
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 55 bp overlap
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 235 bp overlap
LMO2 3 datasets
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 127 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.LMO2.Kasumi-1_SIRUNX1ETO 143 bp overlap
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 176 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 79 bp overlap
MRTFA 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFA.A-673-clone-Asp114 208 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 481 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 135 bp overlap
MYB 2 datasets
ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 83 bp overlap
ChIP THP-1 GSE90769.MYB.THP-1 146 bp overlap
NR3C1 6 datasets
ChIP BEAS-2B_DEX_IA1 GSE125623.NR3C1.BEAS-2B_DEX_IA1 200 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 163 bp overlap
ChIP BEAS-2B_shNR3C1_TNF_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_TNF_IA1 171 bp overlap
ChIP BEAS-2B_shNR3C1_Veh_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_Veh_IA1 158 bp overlap
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 93 bp overlap
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 75 bp overlap
POLR2A 2 datasets
ChIP breast epithelium ENCFF045XXN 182 bp overlap
ChIP breast epithelium ENCFF065JSZ 208 bp overlap
RAD21 1 dataset
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 60 bp overlap
REST 2 datasets
Motif DE_36h DE_36h-REST_MA0138.3 20 bp overlap
ChIP hippocampus GSE144226.REST.hippocampus 82 bp overlap
RNF2 3 datasets
ChIP HMELBRAF_OVER GSE51929.RNF2.HMELBRAF_OVER 86 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 53 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 57 bp overlap
RUNX1 6 datasets
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 66 bp overlap
ChIP CCRF-CEM GSE33850.RUNX1.CCRF-CEM 53 bp overlap
ChIP Jurkat GSE29180.RUNX1.Jurkat 56 bp overlap
ChIP Kasumi-1 GSE45738.RUNX1.Kasumi-1 200 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 130 bp overlap
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 183 bp overlap
RUNX1T1 4 datasets
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 118 bp overlap
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 278 bp overlap
ChIP Kasumi-1_shControl-AE GSE115115.RUNX1T1.Kasumi-1_shControl-AE 91 bp overlap
ChIP Kasumi-1_shTAF1-AE GSE115115.RUNX1T1.Kasumi-1_shTAF1-AE 104 bp overlap
RUNX2 2 datasets
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 109 bp overlap
ChIP PER-117 GSE151819.RUNX2.PER-117 86 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 85 bp overlap
SIN3A 1 dataset
ChIP A-549 ENCSR513XQX.SIN3A.A-549 228 bp overlap
SIX2 1 dataset
Motif DE_36h DE_36h-SIX2_MA1119.2 11 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 492 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 360 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 246 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 235 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 442 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 137 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 175 bp overlap
SMARCA4 2 datasets
ChIP J-Lat_GFP-Clone-A72_DMSO GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_DMSO 296 bp overlap
ChIP J-Lat_GFP-Clone-A72_JQ1 GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_JQ1 262 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 288 bp overlap
SMC1A 2 datasets
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 69 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d0 121 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 201 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 378 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 162 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 120 bp overlap
ChIP TT GSE46837.SOX2.TT 128 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 117 bp overlap
SPI1 5 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 95 bp overlap
ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 150 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 146 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 174 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 137 bp overlap
SRSF3 1 dataset
ChIP K-562 GSE120104.SRSF3.K-562 123 bp overlap
SS18 2 datasets
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 515 bp overlap
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 67 bp overlap
STAT1 3 datasets
ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 82 bp overlap
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 97 bp overlap
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 81 bp overlap
STAT3 8 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 145 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 73 bp overlap
ChIP SUM159PT GSE152203.STAT3.SUM159PT 106 bp overlap
ChIP monocyte_IFNg GSE120943.STAT3.monocyte_IFNg 64 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.STAT3.monocyte_IFNg-LPS 201 bp overlap
ChIP monocyte_IL10 GSE120943.STAT3.monocyte_IL10 180 bp overlap
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 117 bp overlap
ChIP monocyte_resting GSE120943.STAT3.monocyte_resting 106 bp overlap
SUZ12 1 dataset
ChIP ProEs GSE59087.SUZ12.ProEs 101 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 65 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 149 bp overlap
TEAD4 3 datasets
ChIP BJ_fibroblast GSE114367.TEAD4.BJ_fibroblast 81 bp overlap
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 114 bp overlap
ChIP BJ_fibroblast_CD13-pos GSE114367.TEAD4.BJ_fibroblast_CD13-pos 198 bp overlap
TP53 2 datasets
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 51 bp overlap
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 256 bp overlap
TP63 1 dataset
ChIP SUIT-2 GSE115461.TP63.SUIT-2 160 bp overlap
TRIM24 1 dataset
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 142 bp overlap
WDR5 1 dataset
ChIP MV4-11_DMSO GSE115377.WDR5.MV4-11_DMSO 82 bp overlap
YY1AP1 1 dataset
ChIP MCF-10A_DOX GSE115787.YY1AP1.MCF-10A_DOX 62 bp overlap