chr1 : 21,818,757 – 21,818,998
241 bp 77 TFs 1 linked gene
This 241 bp open chromatin element is linked to LDLRAD2 and is bound by 77 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LDLRAD2 6.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:21,813,757 – 21,823,998
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
77 transcription factors
Source
Cell type
AHR 2 datasets
ChIP GM01310_3MC GSE116632.AHR.GM01310_3MC 126 bp overlap
ChIP GM01310_DMSO GSE116632.AHR.GM01310_DMSO 127 bp overlap
BCL11A 4 datasets
ChIP CD34_Day3_30min GSE104676.BCL11A.CD34_Day3_30min 62 bp overlap
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 60 bp overlap
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 71 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 94 bp overlap
BCOR 1 dataset
ChIP K562 ENCFF343XWA 63 bp overlap
BRD3 1 dataset
ChIP K-562_dilution-6-100 GSE140325.BRD3.K-562_dilution-6-100 129 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 78 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 183 bp overlap
EGR1 1 dataset
ChIP K562 ENCFF895KGN 73 bp overlap
ERF 1 dataset
ChIP HAEC_TNFa_4h GSE89970.ERF.HAEC_TNFa_4h 241 bp overlap
ERG 1 dataset
ChIP HAEC GSE89970.ERG.HAEC 223 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_24h DE_24h-EWSR1-FLI1_MA0149.1 18 bp overlap
Elf5 1 dataset
Motif DE_24h DE_24h-Elf5_MA0136.4 8 bp overlap
GRHL2 1 dataset
ChIP OVCA429 GSE71018.GRHL2.OVCA429 53 bp overlap
HDAC2 1 dataset
ChIP K-562 GSE140325.HDAC2.K-562 81 bp overlap
HLF 1 dataset
ChIP HepG2 ENCFF854JLR 114 bp overlap
HMGB2 1 dataset
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 50 bp overlap
HNF4A 1 dataset
ChIP IM95 GSE114018.HNF4A.IM95 117 bp overlap
IFNA1 1 dataset
ChIP Huh-7_NS5 GSE110511.IFNA1.Huh-7_NS5 90 bp overlap
IKZF2 1 dataset
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
IRF1 1 dataset
ChIP K-562 ENCSR000EGT.IRF1.K-562 120 bp overlap
Ikzf3 1 dataset
Motif DE_24h DE_24h-Ikzf3_MA1992.2 9 bp overlap
JUN 3 datasets
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 241 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 241 bp overlap
ChIP HAEC_oxpapc_4h GSE89970.JUN.HAEC_oxpapc_4h 56 bp overlap
JUNB 2 datasets
ChIP HAEC GSE89970.JUNB.HAEC 69 bp overlap
ChIP HAEC GSE89970.JUNB.HAEC 58 bp overlap
KLF1 1 dataset
Motif DE_24h DE_24h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_24h DE_24h-KLF10_MA1511.2 9 bp overlap
KLF11 1 dataset
Motif DE_24h DE_24h-KLF11_MA1512.2 10 bp overlap
KLF12 1 dataset
Motif DE_24h DE_24h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
KLF15 1 dataset
Motif DE_24h DE_24h-KLF15_MA1513.2 8 bp overlap
KLF16 2 datasets
Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap
Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap
KLF2 1 dataset
Motif DE_24h DE_24h-KLF2_MA1515.2 8 bp overlap
KLF3 2 datasets
Motif DE_24h DE_24h-KLF3_MA1516.2 10 bp overlap
ChIP keratinocyte GSE140991.KLF3.keratinocyte 241 bp overlap
KLF4 1 dataset
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
KLF5 4 datasets
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
ChIP ESO-26 GSE132680.KLF5.ESO-26 241 bp overlap
ChIP KATO-III GSE51705.KLF5.KATO-III 123 bp overlap
KLF7 1 dataset
Motif DE_24h DE_24h-KLF7_MA1959.2 8 bp overlap
KLF9 3 datasets
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
ChIP GBM1A GSE62211.KLF9.GBM1A 239 bp overlap
KMT2A 2 datasets
ChIP MOLM-13_VTP-d3-180110 GSE127507.KMT2A.MOLM-13_VTP-d3-180110 184 bp overlap
ChIP OCI-AML-3_VTP GSE129636.KMT2A.OCI-AML-3_VTP 238 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 176 bp overlap
MAX 3 datasets
ChIP K562 ENCFF524IJO 241 bp overlap
ChIP P493-6 GSE36354.MAX.P493-6 241 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 180 bp overlap
MAZ 2 datasets
Motif DE_24h DE_24h-MAZ_MA1522.2 8 bp overlap
ChIP K-562 ENCSR000EFX.MAZ.K-562 115 bp overlap
MED1 3 datasets
ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 184 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 182 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 197 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 58 bp overlap
ChIP K562 ENCFF320GSD 138 bp overlap
NELFE 2 datasets
ChIP K-562_HS GSE112379.NELFE.K-562_HS 132 bp overlap
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 140 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 167 bp overlap
NOTCH1 2 datasets
ChIP pulmonary-artery_endothelial-cell_siCtrl GSE89786.NOTCH1.pulmonary-artery_endothelial-cell_siCtrl 80 bp overlap
ChIP pulmonary-artery_endothelial-cell_siPFKFB3 GSE89786.NOTCH1.pulmonary-artery_endothelial-cell_siPFKFB3 59 bp overlap
PATZ1 2 datasets
Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap
Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap
POLR2A 5 datasets
ChIP adrenal gland ENCFF843OBJ 241 bp overlap
ChIP endothelial cell of umbilical vein ENCFF131DWO 84 bp overlap
ChIP endothelial cell of umbilical vein ENCFF303XUJ 147 bp overlap
ChIP endothelial cell of umbilical vein ENCFF467WJF 185 bp overlap
ChIP sigmoid colon ENCFF725QFT 102 bp overlap
PRDM9 1 dataset
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
Plagl1 1 dataset
Motif DE_24h DE_24h-Plagl1_MA1615.2 8 bp overlap
RELA 6 datasets
ChIP 786-M1A GSE98012.RELA.786-M1A 241 bp overlap
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 236 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 241 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 184 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 77 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 241 bp overlap
RREB1 1 dataset
Motif DE_24h DE_24h-RREB1_MA0073.2 19 bp overlap
RUNX1 3 datasets
ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 241 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 241 bp overlap
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 209 bp overlap
SKI 1 dataset
ChIP Hep-G2 ENCSR754MUD.SKI.Hep-G2 53 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 59 bp overlap
SP1 10 datasets
Motif DE_24h DE_24h-SP1_MA0079.5 9 bp overlap
ChIP GM12878 ENCSR000BHK.SP1.GM12878 112 bp overlap
ChIP HEK293T ERP007114.SP1.HEK293T 241 bp overlap
ChIP Hep-G2 ENCSR460YAM.SP1.Hep-G2 241 bp overlap
ChIP K-562 ENCSR991ELG.SP1.K-562 79 bp overlap
ChIP K562 ENCFF088XXV 241 bp overlap
ChIP K562 ENCFF088XXV 160 bp overlap
ChIP K562 ENCFF907BMO 241 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 68 bp overlap
ChIP WTC11 ENCFF688PEU 241 bp overlap
SP2 1 dataset
Motif DE_24h DE_24h-SP2_MA0516.3 9 bp overlap
SP3 2 datasets
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
SP4 3 datasets
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
ChIP HEK293 GSE76494.SP4.HEK293 107 bp overlap
SP5 1 dataset
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif DE_24h DE_24h-SP8_MA0747.2 11 bp overlap
SP9 1 dataset
Motif DE_24h DE_24h-SP9_MA1564.2 10 bp overlap
STAT3 8 datasets
ChIP T-47D_JC4741 GSE126004.STAT3.T-47D_JC4741 173 bp overlap
ChIP T-47D_JC4751 GSE126004.STAT3.T-47D_JC4751 160 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 225 bp overlap
ChIP T-47D_JC4755 GSE126004.STAT3.T-47D_JC4755 161 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 212 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 241 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 241 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 159 bp overlap
SUPT5H 1 dataset
ChIP HeLa GSE125534.SUPT5H.HeLa 70 bp overlap
Spi1 1 dataset
Motif DE_24h DE_24h-Spi1_MA0080.7 13 bp overlap
TFAP4 1 dataset
ChIP K562 ENCFF727PXG 134 bp overlap
VEZF1 2 datasets
Motif DE_24h DE_24h-VEZF1_MA1578.2 6 bp overlap
ChIP K562 ENCFF053XDV 241 bp overlap
ZBED4 2 datasets
Motif DE_24h DE_24h-ZBED4_MA2328.1 10 bp overlap
Motif DE_24h DE_24h-ZBED4_MA2328.1 10 bp overlap
ZFX 1 dataset
ChIP K-562 ENCSR920ASP.ZFX.K-562 76 bp overlap
ZNF148 5 datasets
Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap
Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap
ChIP K-562 ENCSR018MSO.ZNF148.K-562 241 bp overlap
ChIP K-562 GSE121133.ZNF148.K-562 177 bp overlap
ChIP K562 ENCFF352SDL 241 bp overlap
ZNF202 1 dataset
ChIP HEK293T GSE78099.ZNF202.HEK293T 64 bp overlap
ZNF257 1 dataset
Motif DE_24h DE_24h-ZNF257_MA1710.2 10 bp overlap
ZNF281 1 dataset
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
ZNF320 1 dataset
Motif DE_24h DE_24h-ZNF320_MA1976.2 20 bp overlap
ZNF460 1 dataset
Motif DE_24h DE_24h-ZNF460_MA1596.1 16 bp overlap
ZNF530 1 dataset
Motif DE_24h DE_24h-ZNF530_MA1981.2 14 bp overlap
ZNF682 1 dataset
Motif DE_24h DE_24h-ZNF682_MA1599.2 11 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 193 bp overlap
ZNF740 1 dataset
Motif DE_24h DE_24h-ZNF740_MA0753.3 10 bp overlap
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