chr1 : 185,843,194 185,843,739
545 bp 118 TFs 0 linked genes
This 545 bp open chromatin element has no linked target genes and is bound by 118 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:185,838,194 – 185,848,739
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
118 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 294 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 254 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 530 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 240 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 273 bp overlap
CREB1 1 dataset
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
DPF2 1 dataset
ChIP BIN-67_ctrl GSE117734.DPF2.BIN-67_ctrl 232 bp overlap
Dmrt1 1 dataset
Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
EP300 4 datasets
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 314 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 204 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 128 bp overlap
ERG 8 datasets
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 167 bp overlap
ChIP Jurkat GSE49091.ERG.Jurkat 128 bp overlap
ChIP aortic-endothelial-cell_D16 GSE139377.ERG.aortic-endothelial-cell_D16 235 bp overlap
ChIP aortic-endothelial-cell_D28 GSE139377.ERG.aortic-endothelial-cell_D28 281 bp overlap
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 282 bp overlap
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 200 bp overlap
ChIP aortic-endothelial-cell_D5 GSE139377.ERG.aortic-endothelial-cell_D5 147 bp overlap
ChIP aortic-endothelial-cell_D51 GSE139377.ERG.aortic-endothelial-cell_D51 205 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
ETV2 1 dataset
Motif DE_12h DE_12h-ETV2_MA0762.2 9 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 404 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FERD3L 1 dataset
Motif DE_12h DE_12h-FERD3L_MA1485.1 14 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 350 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 294 bp overlap
FOS 1 dataset
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 192 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 132 bp overlap
ChIP DE DE-FOXA2-2 138 bp overlap
FOXL2 3 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 119 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 50 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 108 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GATA2 2 datasets
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 72 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 76 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 216 bp overlap
ChIP DE DE-GATA4-2 164 bp overlap
ChIP foregut GSE117136.GATA4.foregut 163 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 168 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 165 bp overlap
ChIP DE DE-GATA6-2 157 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 228 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 220 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 330 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 336 bp overlap
ChIP foregut GSE117136.GATA6.foregut 221 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 331 bp overlap
HDAC2 2 datasets
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 204 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 183 bp overlap
HOXA3 1 dataset
Motif DE_12h DE_12h-HOXA3_MA2119.1 7 bp overlap
HOXA4 1 dataset
Motif DE_12h DE_12h-HOXA4_MA1496.2 7 bp overlap
HOXA5 1 dataset
Motif DE_12h DE_12h-HOXA5_MA0158.2 8 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD3 1 dataset
Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Hic1 1 dataset
Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 2 datasets
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JUNB 1 dataset
ChIP HAEC GSE89970.JUNB.HAEC 153 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MAFK 1 dataset
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 184 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 545 bp overlap
MYC 1 dataset
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 398 bp overlap
MYF5 1 dataset
Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap
Mafg 1 dataset
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
NANOG 7 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 455 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 438 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 157 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 473 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 300 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 443 bp overlap
ChIP hESC GSE18292.NANOG.hESC 211 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIC 3 datasets
Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap
ChIP SK-N-SH ENCFF965AKM 357 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 279 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NHLH2 1 dataset
Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 190 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Nfe2l2 1 dataset
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 400 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
RELA 7 datasets
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 136 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 170 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 161 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 168 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 271 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 164 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 262 bp overlap
RXRA 1 dataset
ChIP Hep-G2 ENCSR000BHU.RXRA.Hep-G2 117 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 144 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 180 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 69 bp overlap
SMARCA4 4 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 94 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 93 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 172 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 491 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 250 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 524 bp overlap
SMARCC1 2 datasets
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 289 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 329 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 5 datasets
ChIP HNSC GSE69479.SOX2.HNSC 259 bp overlap
ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 238 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 331 bp overlap
ChIP NCI-H520 GSE137459.SOX2.NCI-H520 462 bp overlap
ChIP hESC GSE18292.SOX2.hESC 210 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 183 bp overlap
SPIB 2 datasets
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
SS18 3 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 68 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 545 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 339 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
TCF12 2 datasets
ChIP SK-N-SH ENCFF147AHB 391 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 219 bp overlap
TCF7 1 dataset
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 2 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 144 bp overlap
TEAD1 2 datasets
ChIP CCLP1 GSE62272.TEAD1.CCLP1 219 bp overlap
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
TOX 1 dataset
ChIP SK-N-SH ENCFF977TQV 297 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 198 bp overlap
ZBTB18 1 dataset
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 275 bp overlap
ZNF214 2 datasets
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
ZNF24 1 dataset
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ZNF382 1 dataset
Motif DE_12h DE_12h-ZNF382_MA1594.1 24 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF547 1 dataset
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap