chr9 : 126,618,749 126,619,087
338 bp 76 TFs 2 linked genes
This 338 bp open chromatin element is linked to LMX1B and LMX1B-DT and is bound by 76 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
LMX1B 4.8 kb Proximal Proximity
LMX1B-DT 6.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:126,613,749 – 126,624,087
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 338 bp overlap
ATF1 1 dataset
ChIP HCT-116 GSE130477.ATF1.HCT-116 274 bp overlap
BCL6 1 dataset
ChIP HepG2 ENCFF423EJH 233 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 338 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 119 bp overlap
ChIP HUES-64 GSE104059.BRD1.HUES-64 77 bp overlap
BRD4 1 dataset
ChIP MCF-10A ERP003925.BRD4.MCF-10A 140 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 174 bp overlap
CBX2 1 dataset
ChIP HepG2 ENCFF838BNI 333 bp overlap
CHD1 3 datasets
ChIP H1 ENCFF998XEK 338 bp overlap
ChIP H1 ENCFF998XEK 119 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 211 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 162 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 338 bp overlap
CTCF 1 dataset
ChIP MM1-S GSE43743.CTCF.MM1-S 113 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 232 bp overlap
EGR1 1 dataset
ChIP WA01 ENCSR000BJA.EGR1.WA01 135 bp overlap
ERG 4 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 198 bp overlap
ChIP K-562 GSE23730.ERG.K-562 161 bp overlap
ChIP K-562_DOX GSE23730.ERG.K-562_DOX 157 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 173 bp overlap
ESR1 5 datasets
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 338 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 162 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 336 bp overlap
ChIP breast_tumor_Male_20 GSE104399.ESR1.breast_tumor_Male_20 172 bp overlap
ChIP breast_tumor_Male_6 GSE104399.ESR1.breast_tumor_Male_6 199 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 282 bp overlap
EZH2 22 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 110 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 181 bp overlap
ChIP DOHH2 ENCFF528GDC 338 bp overlap
ChIP DOHH2 ENCFF528GDC 174 bp overlap
ChIP GM23338 ENCFF613YON 164 bp overlap
ChIP GM23338 ENCFF613YON 174 bp overlap
ChIP H1 ENCFF232NZA 338 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 338 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 338 bp overlap
ChIP HepG2 ENCFF912EIW 338 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 338 bp overlap
ChIP SK-N-SH ENCFF657FZK 202 bp overlap
ChIP astrocyte ENCFF365JTP 338 bp overlap
ChIP astrocyte ENCFF365JTP 338 bp overlap
ChIP astrocyte ENCFF365JTP 338 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 338 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 338 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 244 bp overlap
ChIP hepatocyte ENCFF118DKH 196 bp overlap
ChIP hepatocyte ENCFF552DZB 338 bp overlap
ChIP neural progenitor cell ENCFF018MKA 338 bp overlap
ChIP neural progenitor cell ENCFF472NFV 338 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 338 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 232 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 141 bp overlap
ChIP DE DE-GATA4-2 189 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 312 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 84 bp overlap
ChIP DE DE-GATA6-2 284 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 338 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 309 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 338 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 193 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 338 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 131 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 338 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 258 bp overlap
HDAC6 1 dataset
ChIP GM12878 ENCSR933EYC.HDAC6.GM12878 172 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 234 bp overlap
HLF 1 dataset
ChIP HepG2 ENCFF854JLR 95 bp overlap
HMGB1 1 dataset
ChIP HUVEC-C GSE98245.HMGB1.HUVEC-C 200 bp overlap
INO80 1 dataset
ChIP Hep-G2 GSE97411.INO80.Hep-G2 333 bp overlap
JARID2 3 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 338 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 338 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 338 bp overlap
JUN 6 datasets
ChIP 786-O GSE86092.JUN.786-O 158 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 314 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 161 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 271 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 338 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 338 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 281 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 338 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 306 bp overlap
KDM5B 2 datasets
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 142 bp overlap
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 186 bp overlap
MEN1 1 dataset
ChIP OCI-AML-3_VTP GSE129636.MEN1.OCI-AML-3_VTP 270 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 242 bp overlap
MYOCD 1 dataset
ChIP A-549 GSE128921.MYOCD.A-549 218 bp overlap
NANOG 3 datasets
ChIP WA01 ERP004238.NANOG.WA01 188 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 80 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 295 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 338 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 310 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 263 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 134 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 338 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 338 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 302 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 338 bp overlap
PTBP1 2 datasets
ChIP Hep-G2 GSE120104.PTBP1.Hep-G2 207 bp overlap
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 206 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 338 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 338 bp overlap
RNF2 5 datasets
ChIP H1 ENCFF239FFS 216 bp overlap
ChIP H1 ENCFF239FFS 280 bp overlap
ChIP Hep-G2 ENCSR523XCR.RNF2.Hep-G2 247 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 130 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 338 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 338 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 338 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 249 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 241 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 338 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 126 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 304 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 338 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 338 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 338 bp overlap
SMAD2_3 7 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 338 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 338 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 338 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 338 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 338 bp overlap
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 290 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 338 bp overlap
SMARCA4 4 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 249 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 338 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 146 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 306 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 144 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 209 bp overlap
SMARCC1 7 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 338 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 199 bp overlap
ChIP DE_D1 S10-DE-d1-BAF155-exp1 274 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 320 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 338 bp overlap
ChIP SYO-1 GSE108025.SMARCC1.SYO-1 263 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 252 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 338 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 151 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 338 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 331 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 222 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 230 bp overlap
SUZ12 9 datasets
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 252 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 312 bp overlap
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 222 bp overlap
ChIP H1 ENCFF881NFR 338 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 338 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 338 bp overlap
ChIP NT2/D1 ENCFF574SXS 293 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 338 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 270 bp overlap
TAF15 2 datasets
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 222 bp overlap
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 190 bp overlap
TCF12 2 datasets
ChIP WA01 ENCSR000BIT.TCF12.WA01 53 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 123 bp overlap
TET2 1 dataset
ChIP Jurkat_RUNX1KD GSE85524.TET2.Jurkat_RUNX1KD 295 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 338 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 292 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 325 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 338 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 159 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 231 bp overlap