chr9 : 114,409,093 114,409,699
606 bp 85 TFs 4 linked genes
This 606 bp open chromatin element is linked to 4 target genes and is bound by 85 transcription factors.
Linked Genes
4 genes
Link type
Gene Expression Dist. to TSS Distance Link type
WHRN 96.2 kb Distal Multiome
ATP6V1G1 178.4 kb Distal Multiome
TMEM268 202.0 kb Distal Multiome+HiCAR
COL27A1 253.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:114,404,093 – 114,414,699
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
85 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 248 bp overlap
ATF4 1 dataset
Motif DE_72h DE_72h-ATF4_MA0833.3 10 bp overlap
BMI1 2 datasets
ChIP GM12878 ENCSR469WII.BMI1.GM12878 245 bp overlap
ChIP MCF-7 ENCSR966YYJ.BMI1.MCF-7 323 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 278 bp overlap
BRD4 1 dataset
ChIP THP-1_DMSO-PMA GSE138084.BRD4.THP-1_DMSO-PMA 235 bp overlap
CEBPA 2 datasets
ChIP MV4-11 GSE88746.CEBPA.MV4-11 384 bp overlap
ChIP THP-1_1-25D_2h GSE124032.CEBPA.THP-1_1-25D_2h 117 bp overlap
CEBPB 1 dataset
ChIP MV4-11 GSE88746.CEBPB.MV4-11 415 bp overlap
CEBPG 1 dataset
Motif DE_72h DE_72h-CEBPG_MA1636.2 10 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 55 bp overlap
COMMD3-BMI1,BMI1 2 datasets
ChIP GM12878 ENCFF249AMT 351 bp overlap
ChIP MCF-7 ENCFF570JPP 323 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF335XTP 157 bp overlap
ChIP BLaER1 ENCFF460KDD 92 bp overlap
ESR1 1 dataset
ChIP MCF-7 GSE68355.ESR1.MCF-7 298 bp overlap
ETV1 1 dataset
Motif DE_72h DE_72h-ETV1_MA0761.3 9 bp overlap
EZH2 1 dataset
ChIP SF8628 GSE94834.EZH2.SF8628 314 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 537 bp overlap
ChIP DE DE-FOXA2-2 495 bp overlap
FOXC2 2 datasets
Motif DE_60h DE_60h-FOXC2_MA0846.2 11 bp overlap
Motif DE_72h DE_72h-FOXC2_MA0846.2 11 bp overlap
FOXD3 1 dataset
Motif DE_72h DE_72h-FOXD3_MA0041.3 14 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 207 bp overlap
GATA1::TAL1 3 datasets
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 432 bp overlap
ChIP DE DE-GATA4-2 338 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 324 bp overlap
GATA5 3 datasets
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 454 bp overlap
ChIP DE DE-GATA6-2 353 bp overlap
ChIP foregut GSE117136.GATA6.foregut 339 bp overlap
IKZF2 1 dataset
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_72h DE_72h-Ikzf3_MA1992.2 9 bp overlap
KDM1A 2 datasets
ChIP Kasumi-1_RN1 GSE71739.KDM1A.Kasumi-1_RN1 173 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 368 bp overlap
KLF10 1 dataset
Motif DE_72h DE_72h-KLF10_MA1511.2 9 bp overlap
KLF12 1 dataset
Motif DE_72h DE_72h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_72h DE_72h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif DE_72h DE_72h-KLF16_MA0741.1 11 bp overlap
KLF5 1 dataset
Motif DE_72h DE_72h-KLF5_MA0599.1 10 bp overlap
MAF 1 dataset
Motif DE_72h DE_72h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_72h DE_72h-MAFA_MA1521.2 13 bp overlap
MAZ 1 dataset
Motif DE_72h DE_72h-MAZ_MA1522.2 8 bp overlap
MED26 2 datasets
ChIP HEK293T GSE121024.MED26.HEK293T 192 bp overlap
ChIP HEK293T GSE121024.MED26.HEK293T 78 bp overlap
MYB 1 dataset
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 177 bp overlap
NFIL3 1 dataset
Motif DE_72h DE_72h-NFIL3_MA0025.3 9 bp overlap
NR2C2 1 dataset
Motif DE_72h DE_72h-NR2C2_MA0504.2 14 bp overlap
PATZ1 1 dataset
Motif DE_72h DE_72h-PATZ1_MA1961.2 11 bp overlap
PRDM9 1 dataset
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
PTBP1 2 datasets
ChIP K-562 GSE120104.PTBP1.K-562 215 bp overlap
ChIP K-562 ENCSR948KMB.PTBP1.K-562 179 bp overlap
RAD21 2 datasets
ChIP THP-1_PMA_Dex-0h GSE103477.RAD21.THP-1_PMA_Dex-0h 211 bp overlap
ChIP THP-1_PMA_IFNb-6h GSE103477.RAD21.THP-1_PMA_IFNb-6h 185 bp overlap
RFX1 8 datasets
ChIP K-562 ENCSR968GIB.RFX1.K-562 363 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 350 bp overlap
ChIP K562 ENCFF421AVO 339 bp overlap
ChIP K562 ENCFF809XVG 289 bp overlap
ChIP MCF-7 ENCFF782EZS 344 bp overlap
ChIP MCF-7 ENCFF973QAD 259 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 382 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 335 bp overlap
RORB 2 datasets
Motif DE_60h DE_60h-RORB_MA1150.2 10 bp overlap
Motif DE_72h DE_72h-RORB_MA1150.2 10 bp overlap
RORC 2 datasets
Motif DE_60h DE_60h-RORC_MA1151.2 10 bp overlap
Motif DE_72h DE_72h-RORC_MA1151.2 10 bp overlap
RPA2_phospho 2 datasets
ChIP HeLa GSE108172.RPA2_phospho.HeLa 137 bp overlap
ChIP HeLa_shTOP1 GSE108172.RPA2_phospho.HeLa_shTOP1 324 bp overlap
RUNX1 1 dataset
ChIP MV4-11 GSE79899.RUNX1.MV4-11 201 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 165 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 278 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 276 bp overlap
SMARCA4 3 datasets
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 59 bp overlap
ChIP A-549_AG15720 GSE132290.SMARCA4.A-549_AG15720 72 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 120 bp overlap
SOX13 2 datasets
Motif DE_60h DE_60h-SOX13_MA1120.2 7 bp overlap
Motif DE_72h DE_72h-SOX13_MA1120.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 255 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 319 bp overlap
SOX2 2 datasets
Motif DE_60h DE_60h-SOX2_MA0143.5 7 bp overlap
Motif DE_72h DE_72h-SOX2_MA0143.5 7 bp overlap
SOX21 2 datasets
Motif DE_60h DE_60h-SOX21_MA0866.1 15 bp overlap
Motif DE_72h DE_72h-SOX21_MA0866.1 15 bp overlap
SP1 1 dataset
Motif DE_72h DE_72h-SP1_MA0079.5 9 bp overlap
SP2 1 dataset
Motif DE_72h DE_72h-SP2_MA0516.3 9 bp overlap
SP3 1 dataset
Motif DE_72h DE_72h-SP3_MA0746.3 11 bp overlap
SP4 1 dataset
Motif DE_72h DE_72h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SPI1 8 datasets
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 219 bp overlap
ChIP DC_LPS GSE123347.SPI1.DC_LPS 136 bp overlap
ChIP GM12878 ENCFF134LCP 213 bp overlap
ChIP GM12891 ENCFF563IUT 178 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 153 bp overlap
ChIP THP-1_DIFF GSE25426.SPI1.THP-1_DIFF 105 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 181 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 257 bp overlap
Sox1 2 datasets
Motif DE_60h DE_60h-Sox1_MA0870.1 15 bp overlap
Motif DE_72h DE_72h-Sox1_MA0870.1 15 bp overlap
Sox17 2 datasets
Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap
Motif DE_72h DE_72h-Sox17_MA0078.3 10 bp overlap
Sox3 2 datasets
Motif DE_60h DE_60h-Sox3_MA0514.3 7 bp overlap
Motif DE_72h DE_72h-Sox3_MA0514.3 7 bp overlap
Sox5 2 datasets
Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap
Motif DE_72h DE_72h-Sox5_MA0087.3 8 bp overlap
Sox6 2 datasets
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
Sox7 2 datasets
Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap
Motif DE_72h DE_72h-Sox7_MA2095.1 10 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 171 bp overlap
TFAP2C 1 dataset
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 148 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 333 bp overlap
Wt1 1 dataset
Motif DE_72h DE_72h-Wt1_MA1627.2 10 bp overlap
ZBTB6 3 datasets
Motif DE_48h DE_48h-ZBTB6_MA1581.2 9 bp overlap
Motif DE_60h DE_60h-ZBTB6_MA1581.2 9 bp overlap
Motif DE_72h DE_72h-ZBTB6_MA1581.2 9 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 70 bp overlap
ZFP36 3 datasets
ChIP GM12878 ENCSR900XDB.ZFP36.GM12878 164 bp overlap
ChIP K-562 ENCSR776CYN.ZFP36.K-562 325 bp overlap
ChIP K562 ENCFF255RZG 106 bp overlap
ZNF148 1 dataset
Motif DE_72h DE_72h-ZNF148_MA1653.2 10 bp overlap
ZNF281 1 dataset
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
ZNF317 1 dataset
Motif DE_72h DE_72h-ZNF317_MA1593.2 8 bp overlap
ZNF324 2 datasets
Motif DE_60h DE_60h-ZNF324_MA1977.2 14 bp overlap
Motif DE_72h DE_72h-ZNF324_MA1977.2 14 bp overlap
ZNF701 1 dataset
Motif DE_72h DE_72h-ZNF701_MA1987.2 17 bp overlap
ZNF768 1 dataset
Motif DE_72h DE_72h-ZNF768_MA1731.2 9 bp overlap
ZNF816 2 datasets
Motif DE_60h DE_60h-ZNF816_MA1719.2 15 bp overlap
Motif DE_72h DE_72h-ZNF816_MA1719.2 15 bp overlap
ZSCAN16 1 dataset
Motif DE_72h DE_72h-ZSCAN16_MA2100.1 18 bp overlap