chr9 : 107,593,415 107,593,881
466 bp 87 TFs 0 linked genes
This 466 bp open chromatin element has no linked target genes and is bound by 87 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:107,588,415 – 107,598,881
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
AR 9 datasets
ChIP VCaP GSE148358.AR.VCaP 208 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 104 bp overlap
ChIP VCaP_R1881_1C30 GSE32892.AR.VCaP_R1881_1C30 101 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 91 bp overlap
ChIP VCaP_shCt GSE110655.AR.VCaP_shCt 221 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 181 bp overlap
ChIP VCaP_siBCOR-EtOH GSE122572.AR.VCaP_siBCOR-EtOH 238 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 121 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.AR.prostate-cancer_PDX_70 119 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 327 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 200 bp overlap
BCL11A 2 datasets
ChIP HEK293 ENCFF294OHB 107 bp overlap
ChIP HEK293 ENCSR021DJC.BCL11A.HEK293 101 bp overlap
BCL11B 2 datasets
ChIP HEK293 ENCFF859UHP 159 bp overlap
ChIP HEK293 ENCSR770PQN.BCL11B.HEK293 97 bp overlap
CDX2 4 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 146 bp overlap
ChIP LS180 GSE31939.CDX2.LS180 170 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 255 bp overlap
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 214 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 250 bp overlap
ELL2 1 dataset
ChIP HeLa_DOX GSE40632.ELL2.HeLa_DOX 149 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 170 bp overlap
ERG 3 datasets
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 106 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 322 bp overlap
ChIP VCaP_shERG GSE110655.ERG.VCaP_shERG 201 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 198 bp overlap
EZH2 1 dataset
ChIP hepatocyte ENCFF118DKH 103 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 85 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 124 bp overlap
FOS 1 dataset
ChIP HeLa-S3 ENCSR000EZE.FOS.HeLa-S3 186 bp overlap
FOXA1 10 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 448 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 170 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 59 bp overlap
ChIP HEK293_eGFP_TFS GSE123618.FOXA1.HEK293_eGFP_TFS 69 bp overlap
ChIP HEK293_v5_TFS GSE123618.FOXA1.HEK293_v5_TFS 120 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 466 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 216 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 164 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 100 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 466 bp overlap
FOXA2 10 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 411 bp overlap
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 254 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 289 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 167 bp overlap
ChIP DE DE-FOXA2-1 466 bp overlap
ChIP DE DE-FOXA2-2 466 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 74 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 175 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 287 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 466 bp overlap
FOXM1 1 dataset
ChIP HEK293 GSE60032.FOXM1.HEK293 103 bp overlap
GATA2 2 datasets
ChIP VCaP GSE125236.GATA2.VCaP 138 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 112 bp overlap
GATA4 10 datasets
ChIP A-549 GSE85002.GATA4.A-549 202 bp overlap
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 466 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 250 bp overlap
ChIP DE DE-GATA4-1 466 bp overlap
ChIP DE DE-GATA4-2 466 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 466 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 153 bp overlap
ChIP foregut GSE117136.GATA4.foregut 466 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 466 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 466 bp overlap
GATA6 20 datasets
ChIP AGS GSE51705.GATA6.AGS 200 bp overlap
ChIP Caco-2_DIFF GSE23436.GATA6.Caco-2_DIFF 136 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 121 bp overlap
ChIP DE DE-GATA6-1 466 bp overlap
ChIP DE DE-GATA6-2 466 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 311 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 179 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 153 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 351 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 287 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 466 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 302 bp overlap
ChIP HUG1N GSE51936.GATA6.HUG1N 108 bp overlap
ChIP KATO-III GSE51705.GATA6.KATO-III 69 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 208 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 235 bp overlap
ChIP foregut GSE117136.GATA6.foregut 466 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 426 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 466 bp overlap
GLI2 1 dataset
ChIP HEK293 ENCFF700EUN 136 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HIC1 2 datasets
ChIP HEK293 ENCFF252CFL 167 bp overlap
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 104 bp overlap
HNF1A 1 dataset
ChIP NY15 GSE108150.HNF1A.NY15 143 bp overlap
HNF4A 5 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 139 bp overlap
ChIP GP5D GSE51234.HNF4A.GP5D 105 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 253 bp overlap
ChIP LoVo_PHASEM GSE51290.HNF4A.LoVo_PHASEM 50 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 119 bp overlap
HOXA9 1 dataset
ChIP HEK293-FT GSE62586.HOXA9.HEK293-FT 64 bp overlap
HOXB13 7 datasets
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 91 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 152 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 85 bp overlap
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 154 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 57 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 109 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 108 bp overlap
HOXB8 2 datasets
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 298 bp overlap
ChIP PANC-1 GSE119930.HOXB8.PANC-1 127 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 196 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 217 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 129 bp overlap
JUND 2 datasets
Motif DE_72h DE_72h-JUND_MA0492.2 11 bp overlap
ChIP GP5D GSE51234.JUND.GP5D 167 bp overlap
KDM1A 3 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 142 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 344 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 111 bp overlap
KLF10 2 datasets
ChIP HEK293 ENCFF326EGX 218 bp overlap
ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 136 bp overlap
KLF16 2 datasets
ChIP HEK293 ENCFF558HSJ 150 bp overlap
ChIP HEK293 ENCSR397DQC.KLF16.HEK293 68 bp overlap
KLF3 1 dataset
ChIP HEK293 GSE69739.KLF3.HEK293 83 bp overlap
KLF5 1 dataset
ChIP LoVo_PHASEM GSE51290.KLF5.LoVo_PHASEM 75 bp overlap
MYC 1 dataset
ChIP GP5D GSE51234.MYC.GP5D 149 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 76 bp overlap
NCOA1 1 dataset
ChIP LS180 GSE39277.NCOA1.LS180 59 bp overlap
NCOR2 1 dataset
ChIP LS180 GSE39277.NCOR2.LS180 71 bp overlap
NIPBL 1 dataset
ChIP GP5D GSE51234.NIPBL.GP5D 150 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 244 bp overlap
ONECUT2 2 datasets
ChIP PC-3_hypoxia GSE106305.ONECUT2.PC-3_hypoxia 69 bp overlap
ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 106 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 104 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 205 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 118 bp overlap
PDX1 2 datasets
ChIP hESC GSE58685.PDX1.hESC 52 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 215 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 332 bp overlap
POLR2A 2 datasets
ChIP stomach ENCFF820WZN 233 bp overlap
ChIP transverse colon ENCFF610RWV 163 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 202 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 141 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 152 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 85 bp overlap
RAD21 3 datasets
ChIP GP5D GSE51234.RAD21.GP5D 253 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 412 bp overlap
ChIP LoVo_PHASEM GSE51290.RAD21.LoVo_PHASEM 255 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 91 bp overlap
ChIP K562 ENCFF248CGR 103 bp overlap
ChIP K562 ENCFF957ORK 103 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 50 bp overlap
RXR 1 dataset
ChIP LS180 GSE31939.RXR.LS180 55 bp overlap
Rfx6 1 dataset
Motif DE_72h DE_72h-Rfx6_MA1724.2 9 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 140 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 466 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 223 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 143 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 229 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 358 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 466 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 65 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 63 bp overlap
TCF7L2 2 datasets
ChIP HEK293 ENCFF513JQN 258 bp overlap
ChIP HEK293 ENCFF513JQN 466 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
TSHZ1 2 datasets
ChIP HEK293 ENCFF893BGV 113 bp overlap
ChIP HEK293 ENCSR217WRC.TSHZ1.HEK293 50 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 123 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 84 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 456 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 466 bp overlap
ZEB2 2 datasets
ChIP HEK293 ENCFF847JIE 204 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 166 bp overlap
ZMYM3 2 datasets
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 156 bp overlap
ChIP K562 ENCFF361LXT 81 bp overlap
ZNF18 2 datasets
ChIP HEK293 ENCFF066NGR 94 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 53 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 149 bp overlap
ZNF213 1 dataset
Motif DE_72h DE_72h-ZNF213_MA2121.1 12 bp overlap
ZNF257 1 dataset
Motif DE_72h DE_72h-ZNF257_MA1710.2 10 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 303 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 143 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 51 bp overlap
ZNF629 4 datasets
ChIP HEK293 ENCFF096ELQ 58 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 169 bp overlap
ChIP Hep-G2 ENCSR363ASY.ZNF629.Hep-G2 55 bp overlap
ChIP HepG2 ENCFF490FFQ 90 bp overlap
ZNF639 2 datasets
ChIP HEK293 ENCFF971ZNH 197 bp overlap
ChIP HEK293 ENCSR080CST.ZNF639.HEK293 130 bp overlap
ZNF664 2 datasets
ChIP HEK293 ENCFF343XSW 225 bp overlap
ChIP HEK293 ENCSR714LZQ.ZNF664.HEK293 414 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 107 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 178 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 71 bp overlap