chr9 : 34,585,537 – 34,586,582
1,045 bp 78 TFs 1 linked gene
This 1.0 kb open chromatin element is linked to CNTFR and is bound by 78 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CNTFR 3.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:34,580,537 – 34,591,582
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 225 bp overlap
ARNT 1 dataset
ChIP MCF-7_Ctrl GSE85352.ARNT.MCF-7_Ctrl 425 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 269 bp overlap
BCOR 5 datasets
ChIP WA01 GSE104690.BCOR.WA01 677 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 307 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 489 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 209 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 180 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 382 bp overlap
BRD4 3 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 318 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 158 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 257 bp overlap
CTNNB1 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 440 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 121 bp overlap
ChIP BLaER1 ENCFF274GAT 252 bp overlap
EBF1 3 datasets
ChIP ASC GSE54889.EBF1.ASC 150 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 272 bp overlap
ChIP NALM-6 GSE126300.EBF1.NALM-6 368 bp overlap
EOMES 3 datasets
Motif DE_24h DE_24h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 172 bp overlap
ChIP hESC GSE26097.EOMES.hESC 262 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 683 bp overlap
ERG 2 datasets
ChIP SEM GSE117864.ERG.SEM 330 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 195 bp overlap
ESR1 3 datasets
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 337 bp overlap
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 362 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.ESR1.primary-breast-cancer_B2_DSG 82 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 340 bp overlap
EZH2 14 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 875 bp overlap
ChIP DND41 ENCSR000ASW.EZH2.DND41 129 bp overlap
ChIP GM23338 ENCFF613YON 385 bp overlap
ChIP GM23338 ENCFF613YON 385 bp overlap
ChIP H1 ENCFF232NZA 448 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 344 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 319 bp overlap
ChIP SU-DHL-6 ENCFF882RXP 78 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 194 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 690 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 868 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 815 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 133 bp overlap
ChIP fibroblast of lung ENCFF479BAW 257 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 489 bp overlap
FLI1 2 datasets
ChIP SEM GSE117864.FLI1.SEM 153 bp overlap
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 360 bp overlap
FOXA1 1 dataset
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 127 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 308 bp overlap
GATA2 5 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 249 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 249 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 346 bp overlap
ChIP SH-SY5Y ENCFF485YIB 309 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 191 bp overlap
GATA3 3 datasets
ChIP A549 ENCFF226FVV 421 bp overlap
ChIP MCF-7 ENCFF437NQS 315 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 160 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 291 bp overlap
ChIP DE DE-GATA4-2 288 bp overlap
ChIP foregut GSE117136.GATA4.foregut 314 bp overlap
GATA6 9 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 1011 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 893 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 985 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 317 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 937 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 1021 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 284 bp overlap
ChIP foregut GSE117136.GATA6.foregut 274 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 279 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 227 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 333 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 408 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 959 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 205 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 306 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 232 bp overlap
JARID2 8 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 101 bp overlap
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 233 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 898 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 363 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 298 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 91 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 260 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 64 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 447 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 328 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 1045 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 485 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 422 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 450 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 1045 bp overlap
KLF14 1 dataset
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
KLF5 1 dataset
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
KLF9 2 datasets
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
ChIP GBM1A GSE62211.KLF9.GBM1A 131 bp overlap
MAZ 2 datasets
Motif DE_24h DE_24h-MAZ_MA1522.2 8 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 172 bp overlap
MGA 1 dataset
Motif DE_24h DE_24h-MGA_MA0801.1 8 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 238 bp overlap
MTF2 2 datasets
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 327 bp overlap
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 294 bp overlap
MYC 1 dataset
ChIP P493-6_Dpy30-shRNA GSE101853.MYC.P493-6_Dpy30-shRNA 116 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 427 bp overlap
PBX1 1 dataset
Motif DE_24h DE_24h-PBX1_MA0070.2 9 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 706 bp overlap
POU5F1 9 datasets
ChIP BG03 GSE21614.POU5F1.BG03 297 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 600 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 600 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 423 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 197 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 388 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 228 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 175 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 713 bp overlap
RNF2 5 datasets
ChIP H1 ENCFF239FFS 130 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 429 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 286 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 335 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 847 bp overlap
RUNX1 3 datasets
ChIP 697 GSE138031.RUNX1.697 266 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 188 bp overlap
ChIP NB4 GSE81992.RUNX1.NB4 224 bp overlap
RYBP 2 datasets
ChIP WA01 GSE104690.RYBP.WA01 201 bp overlap
ChIP WA01 GSE104690.RYBP.WA01 138 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 50 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 86 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 138 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 408 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 334 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 1045 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 1045 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 996 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 1003 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 1020 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 341 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 230 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 318 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 108 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 224 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 214 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 201 bp overlap
SMARCC1 6 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 120 bp overlap
ChIP DE_D1 S10-DE-d1-BAF155-exp1 274 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 538 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 284 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 171 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 374 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 249 bp overlap
SP4 1 dataset
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
SUZ12 5 datasets
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 337 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 180 bp overlap
ChIP H1 ENCFF881NFR 191 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 262 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 227 bp overlap
T 3 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 190 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 431 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 279 bp overlap
TBR1 1 dataset
Motif DE_24h DE_24h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_24h DE_24h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_24h DE_24h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_24h DE_24h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
TBX5 1 dataset
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 325 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 533 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 265 bp overlap
Tbx6 1 dataset
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
VDR 3 datasets
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 321 bp overlap
ChIP THP-1_2h_1-25-OH-2D3 GSE89431.VDR.THP-1_2h_1-25-OH-2D3 121 bp overlap
ChIP THP-1_EtOH_1d GSE89431.VDR.THP-1_EtOH_1d 139 bp overlap
ZBTB48 2 datasets
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 226 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 248 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 394 bp overlap
ZNF148 1 dataset
Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 146 bp overlap
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