chr1 : 16,618,793 16,619,020
227 bp 66 TFs 2 linked genes
This 227 bp open chromatin element is linked to ENSG00000271732 and NBPF1 and is bound by 66 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000271732 1.4 kb Proximal Proximity
NBPF1 5.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:16,613,793 – 16,624,020
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 173 bp overlap
AR 1 dataset
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 165 bp overlap
ARID3B 1 dataset
ChIP K562 ENCFF224SWC 227 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 164 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 163 bp overlap
BRD4 2 datasets
ChIP hESC GSE33281.BRD4.hESC 62 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 139 bp overlap
CGGBP1 1 dataset
ChIP K562 ENCFF412PRC 107 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCFF669KMB 50 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 103 bp overlap
CTCF 67 datasets
ChIP 22Rv1 ENCFF466OXN 227 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 162 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 156 bp overlap
ChIP A549 ENCFF182TCQ 186 bp overlap
ChIP GM23338 ENCFF531QOI 220 bp overlap
ChIP GM23338 ENCFF531QOI 95 bp overlap
ChIP GM23338 ENCFF772DML 188 bp overlap
ChIP H1 ENCFF414GZI 207 bp overlap
ChIP H1 ENCFF764RHO 119 bp overlap
ChIP H9 ENCFF152GTF 214 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 138 bp overlap
ChIP HFFc6 ENCFF005CJI 148 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 193 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 98 bp overlap
ChIP HepG2 ENCFF127KUP 204 bp overlap
ChIP HepG2 ENCFF757EKU 227 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 140 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 175 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP K562 ENCFF400DFR 227 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 194 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 178 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 194 bp overlap
ChIP MCF-7 ENCFF414SZG 175 bp overlap
ChIP MCF-7 ENCFF424NQR 177 bp overlap
ChIP MCF-7 ENCFF844STM 177 bp overlap
ChIP MCF-7 ENCFF954TUV 189 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 216 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 199 bp overlap
ChIP SK-N-SH ENCFF731NJX 227 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 99 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 190 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 200 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 139 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 121 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 166 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 206 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 128 bp overlap
ChIP adrenal gland ENCFF678WUB 200 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 227 bp overlap
ChIP coronary artery ENCFF483TFF 215 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 125 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF038KTR 198 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 227 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277YTN 227 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF327VLN 214 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF338KEP 159 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF354RKX 227 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF377YBQ 227 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF631JNO 227 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF677SUG 227 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 196 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF883PFA 227 bp overlap
ChIP endodermal cell ENCFF471YCZ 218 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 144 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 185 bp overlap
ChIP esophagus muscularis mucosa ENCFF182PYY 210 bp overlap
ChIP gastroesophageal sphincter ENCFF546QIK 227 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 178 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 121 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 126 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 175 bp overlap
ChIP neural cell ENCFF335ADI 227 bp overlap
ChIP neural progenitor cell ENCFF420RBO 112 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 174 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 164 bp overlap
ChIP thyroid gland ENCFF748ICQ 209 bp overlap
E2F3 1 dataset
ChIP K562 ENCFF922ILX 227 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 227 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 120 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 126 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 95 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 145 bp overlap
FOXA1 1 dataset
ChIP LS180 GSE140533.FOXA1.LS180 98 bp overlap
GATA6 1 dataset
ChIP AGS GSE51936.GATA6.AGS 82 bp overlap
HBP1 1 dataset
ChIP K562 ENCFF882TEV 175 bp overlap
HDAC2 3 datasets
ChIP K562 ENCFF738SPU 178 bp overlap
ChIP PC-3 GSE147455.HDAC2.PC-3 159 bp overlap
ChIP RH4_DMSO-6H_bioMerck GSE116344.HDAC2.RH4_DMSO-6H_bioMerck 158 bp overlap
ID3 1 dataset
ChIP K562 ENCFF277CGB 149 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 186 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 227 bp overlap
MECOM 1 dataset
ChIP SKH1_CEBPA-ER GSE102697.MECOM.SKH1_CEBPA-ER 163 bp overlap
MLX 2 datasets
ChIP K562 ENCFF022NHI 227 bp overlap
ChIP K562 ENCFF141SFO 227 bp overlap
MTF1 1 dataset
ChIP K562 ENCFF811XMB 227 bp overlap
MXD1 1 dataset
ChIP K562 ENCFF972ENM 202 bp overlap
MXI1 1 dataset
ChIP neural cell ENCFF623HQN 227 bp overlap
MYC 2 datasets
ChIP K562 ENCFF295NDX 227 bp overlap
ChIP MCF-7 ENCFF767RTQ 183 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 177 bp overlap
NFAT5 1 dataset
ChIP Hep-G2 ENCSR565BVI.NFAT5.Hep-G2 168 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BJR.NR3C1.A-549 117 bp overlap
NR4A1 1 dataset
ChIP K562 ENCFF679FCN 227 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 200 bp overlap
PGR 1 dataset
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 173 bp overlap
POLR2A 5 datasets
ChIP HepG2 ENCFF252NAR 227 bp overlap
ChIP sigmoid colon ENCFF302JAZ 88 bp overlap
ChIP spleen ENCFF044PYR 227 bp overlap
ChIP spleen ENCFF446ZGT 196 bp overlap
ChIP spleen ENCFF706IUS 192 bp overlap
POLR2G 1 dataset
ChIP K562 ENCFF047BLG 207 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 151 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 181 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 140 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 227 bp overlap
RAD21 4 datasets
ChIP H1 ENCFF698EWO 204 bp overlap
ChIP H1 ENCFF967OJF 202 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 170 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 152 bp overlap
RREB1 1 dataset
ChIP K562 ENCFF796IEO 227 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1_E2 GSE102697.RUNX1T1.Kasumi-1_E2 164 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 148 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 88 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 123 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 92 bp overlap
TARDBP 1 dataset
ChIP K-562 GSE120104.TARDBP.K-562 138 bp overlap
TBP 4 datasets
ChIP H1 ENCFF859IIO 100 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 227 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 155 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 120 bp overlap
TCF12 1 dataset
ChIP Hep-G2 ENCSR000BJG.TCF12.Hep-G2 121 bp overlap
TCF15 1 dataset
ChIP K562 ENCFF099NVR 227 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF843TII 227 bp overlap
THAP12 1 dataset
ChIP K562 ENCFF453OQF 227 bp overlap
USF1 1 dataset
ChIP K562 ENCFF202SFC 227 bp overlap
ZBTB11 1 dataset
ChIP K562 ENCFF672LNV 227 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 227 bp overlap
ZBTB33 6 datasets
ChIP Hep-G2 ENCSR000BHR.ZBTB33.Hep-G2 116 bp overlap
ChIP HepG2 ENCFF778UKV 227 bp overlap
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 227 bp overlap
ChIP MCF-7 ENCFF622BUU 227 bp overlap
ChIP MCF-7 ENCSR231YFE.ZBTB33.MCF-7 204 bp overlap
ChIP WTC11 ENCFF048CFR 227 bp overlap
ZBTB38 1 dataset
ChIP HepG2 ENCFF875UQX 227 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 227 bp overlap
ZNF143 1 dataset
ChIP K562 ENCFF554TVF 227 bp overlap
ZNF165 1 dataset
ChIP K562 ENCFF039BMN 227 bp overlap
ZNF596 1 dataset
ChIP HEK293 ENCFF854MGB 227 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 213 bp overlap
ZNF768 1 dataset
ChIP HepG2 ENCFF388QCK 114 bp overlap