chr7 : 159,142,805 159,143,658
853 bp 119 TFs 2 linked genes
This 853 bp open chromatin element is linked to VIPR2 and DYNC2I1 and is bound by 119 transcription factors.
Linked Genes
2 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
VIPR2 1.2 kb Proximal Proximity
DYNC2I1 263.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:159,137,805 – 159,148,658
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
119 transcription factors
Source
Cell type
ALX3 1 dataset
Motif DE_48h DE_48h-ALX3_MA0634.2 6 bp overlap
ARGFX 1 dataset
Motif DE_48h DE_48h-ARGFX_MA1463.2 8 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 373 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 183 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 240 bp overlap
BRD4 3 datasets
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 240 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 213 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 59 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 296 bp overlap
CBX8 3 datasets
ChIP K-562 ENCSR000ATW.CBX8.K-562 662 bp overlap
ChIP K562 ENCFF485TBL 510 bp overlap
ChIP K562 ENCFF485TBL 709 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 57 bp overlap
CTCFL 1 dataset
Motif DE_48h DE_48h-CTCFL_MA1102.3 8 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF364PUR 251 bp overlap
ChIP BLaER1 ENCFF896HSY 251 bp overlap
DRGX 1 dataset
Motif DE_48h DE_48h-DRGX_MA1481.2 6 bp overlap
EMX1 1 dataset
Motif DE_48h DE_48h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif DE_48h DE_48h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif DE_48h DE_48h-EN1_MA0027.3 6 bp overlap
EOMES 3 datasets
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 148 bp overlap
ChIP hESC GSE26097.EOMES.hESC 230 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 446 bp overlap
ESX1 1 dataset
Motif DE_48h DE_48h-ESX1_MA0644.3 7 bp overlap
EVX1 1 dataset
Motif DE_48h DE_48h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif DE_48h DE_48h-EVX2_MA0888.2 6 bp overlap
EZH2 10 datasets
ChIP GM23338 ENCFF613YON 299 bp overlap
ChIP GM23338 ENCFF613YON 385 bp overlap
ChIP GM23338 ENCFF613YON 88 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 100 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 329 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 304 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 192 bp overlap
ChIP neural progenitor cell ENCFF018MKA 147 bp overlap
ChIP neural progenitor cell ENCFF472NFV 363 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 104 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 429 bp overlap
ChIP DE DE-FOXA2-2 312 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 433 bp overlap
ChIP DE DE-GATA4-2 577 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 437 bp overlap
ChIP DE DE-GATA6-2 534 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 570 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 438 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 426 bp overlap
GSX1 1 dataset
Motif DE_48h DE_48h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif DE_48h DE_48h-GSX2_MA0893.3 7 bp overlap
HNF1B 1 dataset
Motif DE_48h DE_48h-HNF1B_MA0153.2 13 bp overlap
HOXA1 1 dataset
Motif DE_48h DE_48h-HOXA1_MA1495.2 6 bp overlap
HOXA10 1 dataset
Motif DE_48h DE_48h-HOXA10_MA0899.2 9 bp overlap
HOXA2 1 dataset
Motif DE_48h DE_48h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif DE_48h DE_48h-HOXA3_MA2119.1 7 bp overlap
HOXA5 1 dataset
Motif DE_48h DE_48h-HOXA5_MA0158.2 8 bp overlap
HOXA6 1 dataset
Motif DE_48h DE_48h-HOXA6_MA1497.2 7 bp overlap
HOXB1 1 dataset
Motif DE_48h DE_48h-HOXB1_MA2093.1 7 bp overlap
HOXB2 1 dataset
Motif DE_48h DE_48h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif DE_48h DE_48h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif DE_48h DE_48h-HOXB5_MA0904.3 6 bp overlap
HOXB6 1 dataset
Motif DE_48h DE_48h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_48h DE_48h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_48h DE_48h-HOXB8_MA1502.2 7 bp overlap
HOXC8 1 dataset
Motif DE_48h DE_48h-HOXC8_MA1505.2 6 bp overlap
HOXD3 1 dataset
Motif DE_48h DE_48h-HOXD3_MA0912.2 8 bp overlap
HOXD8 1 dataset
Motif DE_48h DE_48h-HOXD8_MA0910.3 7 bp overlap
HOXD9 1 dataset
Motif DE_48h DE_48h-HOXD9_MA0913.3 9 bp overlap
Hmx1 1 dataset
Motif DE_48h DE_48h-Hmx1_MA0896.2 9 bp overlap
Hmx3 1 dataset
Motif DE_48h DE_48h-Hmx3_MA0898.2 9 bp overlap
ISX 1 dataset
Motif DE_48h DE_48h-ISX_MA0654.2 6 bp overlap
JARID2 3 datasets
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 69 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 295 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 123 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 86 bp overlap
KMT2A 1 dataset
ChIP MOLM-13_VTP-d3-180110 GSE127507.KMT2A.MOLM-13_VTP-d3-180110 356 bp overlap
LHX5 1 dataset
Motif DE_48h DE_48h-LHX5_MA1519.2 7 bp overlap
LHX6 1 dataset
Motif DE_48h DE_48h-LHX6_MA0658.2 8 bp overlap
LMX1A 1 dataset
Motif DE_48h DE_48h-LMX1A_MA0702.3 7 bp overlap
LMX1B 1 dataset
Motif DE_48h DE_48h-LMX1B_MA0703.3 8 bp overlap
Lhx1 1 dataset
Motif DE_48h DE_48h-Lhx1_MA1518.3 10 bp overlap
Lhx4 1 dataset
Motif DE_48h DE_48h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif DE_48h DE_48h-Lhx8_MA0705.2 6 bp overlap
MEOX1 1 dataset
Motif DE_48h DE_48h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif DE_48h DE_48h-MEOX2_MA0706.2 7 bp overlap
MGA 1 dataset
Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap
MIXL1 1 dataset
Motif DE_48h DE_48h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif DE_48h DE_48h-MNX1_MA0707.3 6 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 193 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 207 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 208 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 508 bp overlap
NFATC3 1 dataset
Motif DE_48h DE_48h-NFATC3_MA0625.3 6 bp overlap
NKX6-1 1 dataset
Motif DE_48h DE_48h-NKX6-1_MA0674.2 7 bp overlap
NKX6-2 1 dataset
Motif DE_48h DE_48h-NKX6-2_MA0675.2 6 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 311 bp overlap
NOTO 1 dataset
Motif DE_48h DE_48h-NOTO_MA0710.2 7 bp overlap
NRL 1 dataset
Motif DE_48h DE_48h-NRL_MA0842.3 12 bp overlap
Nfatc1 1 dataset
Motif DE_48h DE_48h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_48h DE_48h-Nfatc2_MA0152.3 8 bp overlap
PATZ1 1 dataset
Motif DE_48h DE_48h-PATZ1_MA1961.2 11 bp overlap
PBX1 1 dataset
Motif DE_48h DE_48h-PBX1_MA0070.2 9 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 546 bp overlap
PDX1 1 dataset
Motif DE_48h DE_48h-PDX1_MA0132.3 6 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 385 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 369 bp overlap
POU6F1 1 dataset
Motif DE_48h DE_48h-POU6F1_MA0628.2 6 bp overlap
PRDM9 1 dataset
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
PRRX1 1 dataset
Motif DE_48h DE_48h-PRRX1_MA0716.2 6 bp overlap
Plagl1 1 dataset
Motif DE_48h DE_48h-Plagl1_MA1615.2 8 bp overlap
RAX2 1 dataset
Motif DE_48h DE_48h-RAX2_MA0717.2 6 bp overlap
RELB 1 dataset
Motif DE_48h DE_48h-RELB_MA1117.2 7 bp overlap
RNF2 4 datasets
ChIP H1 ENCFF239FFS 139 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 154 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 203 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 204 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 233 bp overlap
SHOX 1 dataset
Motif DE_48h DE_48h-SHOX_MA0630.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 662 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 258 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 490 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 517 bp overlap
SMARCA4 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 261 bp overlap
SOX10 1 dataset
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
SOX13 1 dataset
Motif DE_48h DE_48h-SOX13_MA1120.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 606 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 852 bp overlap
SOX2 1 dataset
Motif DE_48h DE_48h-SOX2_MA0143.5 7 bp overlap
SP5 1 dataset
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
SREBF1 1 dataset
Motif DE_48h DE_48h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif DE_48h DE_48h-SREBF2_MA0596.1 10 bp overlap
Shox2 1 dataset
Motif DE_48h DE_48h-Shox2_MA0720.2 6 bp overlap
Sox3 1 dataset
Motif DE_48h DE_48h-Sox3_MA0514.3 7 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 200 bp overlap
TBX21 1 dataset
Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap
TBX5 5 datasets
ChIP cardiomyocyte GSE85628.TBX5.cardiomyocyte 449 bp overlap
ChIP cardiomyocyte GSE85628.TBX5.cardiomyocyte 271 bp overlap
ChIP cardiomyocyte_1 GSE85628.TBX5.cardiomyocyte_1 449 bp overlap
ChIP cardiomyocyte_1 GSE85628.TBX5.cardiomyocyte_1 271 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 60 bp overlap
TLX2 1 dataset
Motif DE_48h DE_48h-TLX2_MA1577.2 6 bp overlap
UNCX 1 dataset
Motif DE_48h DE_48h-UNCX_MA0721.2 6 bp overlap
VAX1 1 dataset
Motif DE_48h DE_48h-VAX1_MA0722.2 7 bp overlap
VAX2 1 dataset
Motif DE_48h DE_48h-VAX2_MA0723.3 6 bp overlap
VSX1 1 dataset
Motif DE_48h DE_48h-VSX1_MA0725.2 7 bp overlap
VSX2 1 dataset
Motif DE_48h DE_48h-VSX2_MA0726.2 7 bp overlap
ZNF16 1 dataset
Motif DE_48h DE_48h-ZNF16_MA1654.2 21 bp overlap
ZNF257 2 datasets
Motif DE_48h DE_48h-ZNF257_MA1710.2 10 bp overlap
Motif DE_48h DE_48h-ZNF257_MA1710.2 10 bp overlap
ZNF460 1 dataset
Motif DE_48h DE_48h-ZNF460_MA1596.1 16 bp overlap
ZNF669 1 dataset
Motif DE_48h DE_48h-ZNF669_MA1985.1 15 bp overlap
mix-a 1 dataset
Motif DE_48h DE_48h-mix-a_MA0621.2 7 bp overlap