chr7 : 98,362,631 – 98,363,114

483 bp 59 TFs 5 linked genes

This 483 bp open chromatin element is linked to 5 target genes and is bound by 59 transcription factors.

Linked Genes

5 genes

Gene	Dist. to TSS	Distance	Link type
BAIAP2L1	38.2 kb	Distal	Multiome
BRI3	110.5 kb	Distal	Multiome
TECPR1	110.7 kb	Distal	Multiome
NPTX2	254.4 kb	Distal	Multiome
LMTK2	256.0 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

59 transcription factors

AR 1 dataset

ChIP PC-3 GSE54110.AR.PC-3 182 bp overlap

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 296 bp overlap

BACH1 1 dataset

ChIP WA01 ENCSR000EBQ.BACH1.WA01 197 bp overlap

BCL11A 2 datasets

ChIP H1 ENCFF833IPY 145 bp overlap

ChIP WA01 ENCSR000BIP.BCL11A.WA01 156 bp overlap

BCOR 3 datasets

ChIP WA01 GSE104690.BCOR.WA01 393 bp overlap

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 277 bp overlap

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 390 bp overlap

BRD4 1 dataset

ChIP MV4-11_IBET151_50nM GSE120715.BRD4.MV4-11_IBET151_50nM 109 bp overlap

CEBPB 2 datasets

ChIP H1 ENCFF871PTR 162 bp overlap

ChIP WA01 ENCSR000EBV.CEBPB.WA01 208 bp overlap

CHD2 1 dataset

ChIP WA01 ENCSR000EBT.CHD2.WA01 176 bp overlap

CHD7 2 datasets

ChIP H1 ENCFF126NLU 456 bp overlap

ChIP WA01 ENCSR000AVA.CHD7.WA01 172 bp overlap

CTBP2 1 dataset

ChIP WA01 ENCSR000EUO.CTBP2.WA01 283 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 178 bp overlap

EP300 2 datasets

ChIP H1 ENCFF927IYK 290 bp overlap

ChIP WA01 ENCSR000BKK.EP300.WA01 165 bp overlap

ESR1 1 dataset

ChIP MCF-7 GSE103023.ESR1.MCF-7 78 bp overlap

ESR1_Y537N 2 datasets

ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 167 bp overlap

ChIP MCF-7_dox_E2 GSE94493.ESR1_Y537N.MCF-7_dox_E2 81 bp overlap

EZH2 1 dataset

ChIP OCI-Ly1 GSE45982.EZH2.OCI-Ly1 104 bp overlap

FOXH1 1 dataset

Motif ES_0h ES_0h-FOXH1_MA0479.2 8 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 147 bp overlap

HDAC2 2 datasets

ChIP H1 ENCFF939VKA 237 bp overlap

ChIP WA01 ENCSR000BNR.HDAC2.WA01 239 bp overlap

HSF1 4 datasets

ChIP HCT-116_A8_43 GSE152144.HSF1.HCT-116_A8_43 229 bp overlap

ChIP MCF-7_hyperthermia-15min GSE137558.HSF1.MCF-7_hyperthermia-15min 260 bp overlap

ChIP U2OS_HEAT_20 GSE60984.HSF1.U2OS_HEAT_20 90 bp overlap

IFNA1 1 dataset

ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 139 bp overlap

Isl1 1 dataset

Motif ES_0h ES_0h-Isl1_MA1608.2 7 bp overlap

MORC2 1 dataset

ChIP H9 GSE95374.MORC2.H9 322 bp overlap

MYC 1 dataset

ChIP CC-LP-1 GSE124430.MYC.CC-LP-1 76 bp overlap

NANOG 9 datasets

ChIP H1 ENCFF747ZPQ 179 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 415 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 464 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 360 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 483 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 385 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 356 bp overlap

ChIP hESC GSE20650.NANOG.hESC 280 bp overlap

ChIP hESC GSE18292.NANOG.hESC 220 bp overlap

NIPBL 2 datasets

ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 214 bp overlap

ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 201 bp overlap

NKX2-2 1 dataset

Motif ES_0h ES_0h-NKX2-2_MA1645.2 8 bp overlap

NKX2-5 1 dataset

Motif ES_0h ES_0h-NKX2-5_MA0063.3 7 bp overlap

PAX1 1 dataset

Motif ES_0h ES_0h-PAX1_MA0779.2 16 bp overlap

PAX9 1 dataset

Motif ES_0h ES_0h-PAX9_MA0781.2 16 bp overlap

PHIP 1 dataset

ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 171 bp overlap

PKNOX1 1 dataset

Motif ES_0h ES_0h-PKNOX1_MA0782.3 10 bp overlap

POLR2A 1 dataset

ChIP H1 ENCFF833NJP 318 bp overlap

POU5F1 1 dataset

ChIP HUES-8 GSE109524.POU5F1.HUES-8 399 bp overlap

Prdm14 1 dataset

Motif ES_0h ES_0h-Prdm14_MA1998.2 8 bp overlap

RAD21 1 dataset

ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 101 bp overlap

REST 1 dataset

ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 146 bp overlap

SIN3A 1 dataset

ChIP WA01 ENCSR000EBO.SIN3A.WA01 152 bp overlap

SMAD2 1 dataset

ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 247 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 291 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 315 bp overlap

SMAD2_3 1 dataset

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 268 bp overlap

SOX2 4 datasets

ChIP RENVM GSE49404.SOX2.RENVM 140 bp overlap

ChIP hESC GSE69479.SOX2.hESC 222 bp overlap

ChIP hESC GSE18292.SOX2.hESC 95 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 251 bp overlap

SP1 2 datasets

ChIP H1 ENCFF263FUH 318 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 246 bp overlap

SRF 1 dataset

ChIP K-562 ENCSR000BLK.SRF.K-562 132 bp overlap

STAT3 5 datasets

ChIP HCC1187 GSE152203.STAT3.HCC1187 160 bp overlap

ChIP MCF10A-Er-Src_EtOH GSE115597.STAT3.MCF10A-Er-Src_EtOH 140 bp overlap

ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 196 bp overlap

ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 137 bp overlap

ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 112 bp overlap

T 2 datasets

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 284 bp overlap

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 186 bp overlap

TBX19 1 dataset

Motif ES_0h ES_0h-TBX19_MA0804.2 17 bp overlap

TBXT 1 dataset

Motif ES_0h ES_0h-TBXT_MA0009.2 16 bp overlap

TCF12 2 datasets

ChIP H1 ENCFF203EBH 251 bp overlap

ChIP WA01 ENCSR000BIT.TCF12.WA01 170 bp overlap

TCF3 1 dataset

ChIP NPC GSE154479.TCF3.NPC 192 bp overlap

TEAD4 2 datasets

ChIP ESC S26-ESC-d0-TEAD4-exp1 141 bp overlap

ChIP H1 ENCFF778PAX 206 bp overlap

TFAP2C 1 dataset

ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 245 bp overlap

VENTX 1 dataset

Motif ES_0h ES_0h-VENTX_MA0724.1 9 bp overlap

YY1 2 datasets

ChIP H1 ENCFF524BTL 309 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 217 bp overlap

ZNF143 1 dataset

ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 120 bp overlap

ZNF207 1 dataset

ChIP WA09 GSE118632.ZNF207.WA09 250 bp overlap

ZNF24 1 dataset

Motif ES_0h ES_0h-ZNF24_MA1124.1 13 bp overlap

ZNF354C 1 dataset

Motif ES_0h ES_0h-ZNF354C_MA0130.1 6 bp overlap

ZNF524 1 dataset

Motif ES_0h ES_0h-ZNF524_MA2096.1 9 bp overlap

ZNF549 1 dataset

Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap