chr1 : 119,326,262 119,326,755
493 bp 67 TFs 2 linked genes
This 493 bp open chromatin element is linked to ENSG00000227712 and LINC01780 and is bound by 67 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000227712 460 bp At TSS Proximity
LINC01780 642 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:119,321,262 – 119,331,755
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 339 bp overlap
ATF2 1 dataset
Motif DE_12h DE_12h-ATF2_MA1632.2 10 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 157 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 274 bp overlap
BRD4 4 datasets
ChIP COLO-320 GSE73319.BRD4.COLO-320 384 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 239 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 280 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 367 bp overlap
BRF1 1 dataset
ChIP H9 GSE94418.BRF1.H9 179 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 257 bp overlap
CREB1 3 datasets
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 209 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 279 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 205 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 183 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 451 bp overlap
ESR1 2 datasets
ChIP MCF-7_SHFOXA1_E2 ERP000380.ESR1.MCF-7_SHFOXA1_E2 148 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 171 bp overlap
ETS1 1 dataset
ChIP SCC-25 GSE109884.ETS1.SCC-25 227 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 261 bp overlap
FOXO4 1 dataset
ChIP HepG2 ENCFF909ISL 290 bp overlap
GATA6 4 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 216 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 324 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 332 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 314 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 493 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF353UJQ 493 bp overlap
ChIP H1 ENCFF939VKA 233 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 325 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JUN 3 datasets
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 493 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 448 bp overlap
JUND 2 datasets
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 107 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 138 bp overlap
MAX 11 datasets
ChIP H1 ENCFF601FOM 325 bp overlap
ChIP H1 ENCFF914VQY 224 bp overlap
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 152 bp overlap
ChIP HepG2 ENCFF507HCX 354 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 330 bp overlap
ChIP WTC11 ENCFF223QFY 493 bp overlap
ChIP liver ENCFF092GVW 456 bp overlap
ChIP liver ENCFF584QGB 457 bp overlap
ChIP liver ENCFF584QGB 263 bp overlap
ChIP liver ENCSR847DIT.MAX.liver 231 bp overlap
ChIP liver ENCSR521IID.MAX.liver 201 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 368 bp overlap
MGA 2 datasets
ChIP HepG2 ENCFF057YJE 493 bp overlap
ChIP HepG2 ENCFF057YJE 365 bp overlap
MITF 1 dataset
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 209 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 326 bp overlap
NANOG 7 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 465 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 405 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 207 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 493 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 215 bp overlap
ChIP hESC GSE18292.NANOG.hESC 181 bp overlap
NFATC3 1 dataset
ChIP Hep-G2 GSE97661.NFATC3.Hep-G2 221 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 377 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 320 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 218 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
POU5F1 5 datasets
ChIP BG03 GSE21614.POU5F1.BG03 178 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 384 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 373 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 385 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 173 bp overlap
RARA 1 dataset
Motif DE_12h DE_12h-RARA_MA0730.1 17 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 162 bp overlap
RNF2 2 datasets
ChIP WA01 ENCSR784VUY.RNF2.WA01 297 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 467 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 324 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 157 bp overlap
SMARCA4 6 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 231 bp overlap
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 85 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 493 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 493 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 317 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 339 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 384 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 250 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 240 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 262 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 177 bp overlap
ChIP hESC GSE18292.SOX2.hESC 121 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 293 bp overlap
STAT1 2 datasets
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
ChIP HeLa-S3 ENCSR000EZK.STAT1.HeLa-S3 291 bp overlap
STAT3 1 dataset
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 189 bp overlap
TBP 1 dataset
ChIP hESC_2h GSE122298.TBP.hESC_2h 123 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 233 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 223 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 267 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 365 bp overlap
TP53 1 dataset
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 156 bp overlap
USF1 3 datasets
ChIP H1 ENCFF090WVU 115 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 365 bp overlap
ChIP WTC11 ENCFF699QGS 263 bp overlap
USF2 2 datasets
ChIP H1 ENCFF434EDF 233 bp overlap
ChIP WTC11 ENCFF139JAW 279 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 236 bp overlap
ChIP liver ENCFF400MBC 272 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCFF631OSW 320 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 202 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 242 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 258 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap