chr6 : 71,412,591 71,412,842
251 bp 65 TFs 2 linked genes
This 251 bp open chromatin element is linked to LINC00472 and MIR30A and is bound by 65 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
LINC00472 7.9 kb Proximal Proximity
MIR30A 9.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:71,407,591 – 71,417,842
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
AFF4 3 datasets
ChIP HeLa GSE40632.AFF4.HeLa 251 bp overlap
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 241 bp overlap
ChIP HeLa_DOX_EGF GSE40632.AFF4.HeLa_DOX_EGF 179 bp overlap
AR 2 datasets
ChIP LNCaP GSE43720.AR.LNCaP 136 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 156 bp overlap
ARID1A 1 dataset
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 183 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 86 bp overlap
BRCA1 1 dataset
ChIP K-562 ENCSR223MLH.BRCA1.K-562 111 bp overlap
BRD2 3 datasets
ChIP MDA-MB-231_NTsiRNA GSE116879.BRD2.MDA-MB-231_NTsiRNA 137 bp overlap
ChIP SUM159PT_DMSO GSE116879.BRD2.SUM159PT_DMSO 242 bp overlap
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 251 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 251 bp overlap
BRD4 9 datasets
ChIP HEK293T GSE39579.BRD4.HEK293T 251 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 251 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 108 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 241 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 241 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 251 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 251 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 226 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 181 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 251 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 141 bp overlap
CEBPB 1 dataset
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 163 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 237 bp overlap
ELL2 2 datasets
ChIP HeLa GSE40632.ELL2.HeLa 198 bp overlap
ChIP HeLa_DOX GSE40632.ELL2.HeLa_DOX 148 bp overlap
ESR1 4 datasets
ChIP T-47D_JC4732 GSE126004.ESR1.T-47D_JC4732 159 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 146 bp overlap
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 193 bp overlap
ChIP breast_tumor_Male_19 GSE104399.ESR1.breast_tumor_Male_19 212 bp overlap
FOSL1 1 dataset
ChIP BT-549 GSE112961.FOSL1.BT-549 170 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 198 bp overlap
GATA4 1 dataset
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 64 bp overlap
GRHL2 3 datasets
ChIP HBE GSE46194.GRHL2.HBE 198 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 160 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 227 bp overlap
HOXB13 1 dataset
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 113 bp overlap
KMT2A 3 datasets
ChIP HEK293T_C-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_C-term_shCtrl_TASP1-KO 54 bp overlap
ChIP HEK293T_N-term GSE90762.KMT2A.HEK293T_N-term 178 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 56 bp overlap
MAX 1 dataset
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 156 bp overlap
MED1 2 datasets
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 251 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 251 bp overlap
MYC 1 dataset
ChIP HeLa-S3 ENCSR000EZD.MYC.HeLa-S3 162 bp overlap
MYCN 1 dataset
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 210 bp overlap
NCAPH2 2 datasets
ChIP RMG-I GSE120058.NCAPH2.RMG-I 251 bp overlap
ChIP RMG-I_ARID1A-KO GSE120058.NCAPH2.RMG-I_ARID1A-KO 251 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 175 bp overlap
NR3C1 7 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 201 bp overlap
ChIP A-549 ENCSR000BJR.NR3C1.A-549 163 bp overlap
ChIP A-549 ENCSR000BHG.NR3C1.A-549 127 bp overlap
ChIP HCC1937 GSE152203.NR3C1.HCC1937 162 bp overlap
ChIP HeLa-B2_GRKD_TA_TNFA GSE24518.NR3C1.HeLa-B2_GRKD_TA_TNFA 106 bp overlap
ChIP HeLa-B2_TA GSE24518.NR3C1.HeLa-B2_TA 247 bp overlap
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 185 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 111 bp overlap
PGR 2 datasets
ChIP AB32 GSE31129.PGR.AB32 132 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 177 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 251 bp overlap
POLR2A 5 datasets
ChIP HeLa-S3 ENCFF773DNG 251 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 251 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 167 bp overlap
ChIP prostate gland ENCFF545MVF 165 bp overlap
ChIP prostate gland ENCFF545MVF 251 bp overlap
PPARG 1 dataset
ChIP SGBS GSE41629.PPARG.SGBS 128 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 166 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 251 bp overlap
RELA 1 dataset
ChIP HeLa-B2_GRKD_TA_TNFA GSE24518.RELA.HeLa-B2_GRKD_TA_TNFA 108 bp overlap
RXRA 1 dataset
ChIP JMSU-1 GSE107734.RXRA.JMSU-1 251 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 250 bp overlap
SIN3A 1 dataset
ChIP A-549 ENCSR513XQX.SIN3A.A-549 251 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 251 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 203 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 251 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 219 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 251 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 150 bp overlap
SMARCB1 1 dataset
ChIP RMG-I_ARID1A-KO GSE120058.SMARCB1.RMG-I_ARID1A-KO 146 bp overlap
SMC3 2 datasets
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 178 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 161 bp overlap
STAT1 1 dataset
ChIP HeLa-S3 ENCSR000EZK.STAT1.HeLa-S3 213 bp overlap
STAT3 4 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 145 bp overlap
ChIP MDA-MB-231_EtOH GSE85579.STAT3.MDA-MB-231_EtOH 140 bp overlap
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 211 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 183 bp overlap
TAF1 2 datasets
ChIP HeLa-S3 ENCFF556LCN 251 bp overlap
ChIP HeLa-S3 ENCSR000BHT.TAF1.HeLa-S3 251 bp overlap
TBP 3 datasets
ChIP HeLa-S3 ENCFF715NNJ 251 bp overlap
ChIP HeLa-S3 ENCSR000EDD.TBP.HeLa-S3 251 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 125 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 134 bp overlap
TP53 1 dataset
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 114 bp overlap
TRIM28 3 datasets
ChIP HEK293 ENCFF265CEM 251 bp overlap
ChIP HEK293 ENCFF582MWI 251 bp overlap
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 251 bp overlap
UBN1 1 dataset
ChIP HeLa GSE45024.UBN1.HeLa 251 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 217 bp overlap
YY1 2 datasets
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 216 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 202 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 172 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 251 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 251 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 174 bp overlap
ZNF17 1 dataset
ChIP HEK293T GSE78099.ZNF17.HEK293T 154 bp overlap
ZNF273 1 dataset
ChIP HEK293T GSE78099.ZNF273.HEK293T 160 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 185 bp overlap
ZNF519 1 dataset
ChIP HEK293T GSE78099.ZNF519.HEK293T 111 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 157 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 247 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 148 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 151 bp overlap