chr6 : 43,625,568 43,626,341
773 bp 90 TFs 2 linked genes
This 773 bp open chromatin element is linked to GTPBP2 and MAD2L1BP and is bound by 90 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
GTPBP2 2.8 kb Proximal Proximity
MAD2L1BP 9.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:43,620,568 – 43,631,341
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
AFF4 2 datasets
ChIP K562 ENCFF751HCS 66 bp overlap
ChIP MCF-7 GSE144036.AFF4.MCF-7 55 bp overlap
AR 1 dataset
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 229 bp overlap
ARID1A 1 dataset
ChIP RMG-I GSE104545.ARID1A.RMG-I 239 bp overlap
ARID2 1 dataset
ChIP Aska-SS GSE108025.ARID2.Aska-SS 120 bp overlap
ARID4B 1 dataset
ChIP K562 ENCFF791HBV 621 bp overlap
BRD4 2 datasets
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 138 bp overlap
ChIP K-562_iBET GSE138084.BRD4.K-562_iBET 312 bp overlap
CBX2 1 dataset
ChIP HEK293T GSE34774.CBX2.HEK293T 94 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 251 bp overlap
ChIP BLaER1 ENCFF364PUR 171 bp overlap
DNMT3B 3 datasets
ChIP HUES-8 GSE99346.DNMT3B.HUES-8 285 bp overlap
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 220 bp overlap
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 298 bp overlap
E2F1 1 dataset
ChIP MDA-MB-231 GSE95303.E2F1.MDA-MB-231 166 bp overlap
ELF1 1 dataset
ChIP K562 ENCFF886KFV 129 bp overlap
ELF4 1 dataset
ChIP K562 ENCFF200OMJ 311 bp overlap
ETV1 1 dataset
ChIP K562 ENCFF389WTI 273 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 716 bp overlap
ChIP DE DE-FOXA2-2 594 bp overlap
FOXP4 2 datasets
ChIP K562 ENCFF086EQT 322 bp overlap
ChIP K562 ENCFF086EQT 391 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 729 bp overlap
ChIP DE DE-GATA4-2 633 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 597 bp overlap
ChIP DE DE-GATA6-2 677 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 136 bp overlap
HBP1 1 dataset
ChIP K562 ENCFF882TEV 305 bp overlap
HDAC8 1 dataset
ChIP K-562 ENCSR000DJZ.HDAC8.K-562 127 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 509 bp overlap
HINFP 1 dataset
ChIP K562 ENCFF361QXJ 113 bp overlap
ID3 1 dataset
ChIP K562 ENCFF170RNI 237 bp overlap
IFI16 1 dataset
ChIP K562 ENCFF291QSI 257 bp overlap
IKZF1 1 dataset
ChIP K562 ENCFF348IBL 206 bp overlap
IRF9 1 dataset
ChIP K-562 ENCSR926KTP.IRF9.K-562 106 bp overlap
JUN 1 dataset
ChIP K-562 ENCSR000EFS.JUN.K-562 143 bp overlap
KDM5B 1 dataset
ChIP K-562 ENCSR000AQA.KDM5B.K-562 103 bp overlap
KLF6 1 dataset
ChIP K-562 ENCSR297CGF.KLF6.K-562 134 bp overlap
MAX 1 dataset
ChIP K562 ENCFF398VJM 537 bp overlap
MAZ 2 datasets
ChIP K562 ENCFF809XHP 251 bp overlap
ChIP K562 ENCFF982GSZ 413 bp overlap
MED1 4 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 279 bp overlap
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 67 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 234 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 226 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 206 bp overlap
MYC 2 datasets
ChIP K562 ENCFF295NDX 445 bp overlap
ChIP K562 ENCFF295NDX 445 bp overlap
NCAPH2 2 datasets
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 211 bp overlap
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 204 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 273 bp overlap
NFXL1 2 datasets
ChIP K562 ENCFF898RYR 345 bp overlap
ChIP K562 ENCFF898RYR 66 bp overlap
NFYA 1 dataset
ChIP K562 ENCFF732HOX 407 bp overlap
NR4A1 1 dataset
ChIP K562 ENCFF998LHF 152 bp overlap
NSD2 3 datasets
ChIP K-562 ENCSR000AVE.NSD2.K-562 248 bp overlap
ChIP K-562 ENCSR000AVE.NSD2.K-562 211 bp overlap
ChIP K562 ENCFF571LTZ 297 bp overlap
OTX1 1 dataset
ChIP K562 ENCFF829SLD 305 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 287 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 125 bp overlap
POLR2A 8 datasets
ChIP GM12878 ENCFF263VRI 335 bp overlap
ChIP GM12878 ENCFF263VRI 481 bp overlap
ChIP K562 ENCFF262YXJ 435 bp overlap
ChIP K562 ENCFF262YXJ 187 bp overlap
ChIP K562 ENCFF514URW 154 bp overlap
ChIP K562 ENCFF757TUO 266 bp overlap
ChIP K562 ENCFF757TUO 437 bp overlap
ChIP SK-N-SH ENCFF683PFH 162 bp overlap
POLR2B 1 dataset
ChIP K562 ENCFF513ENO 399 bp overlap
POLR2G 8 datasets
ChIP HepG2 ENCFF241AEG 248 bp overlap
ChIP HepG2 ENCFF508UTS 247 bp overlap
ChIP K562 ENCFF047BLG 109 bp overlap
ChIP K562 ENCFF047BLG 296 bp overlap
ChIP K562 ENCFF047BLG 208 bp overlap
ChIP K562 ENCFF648YPL 109 bp overlap
ChIP K562 ENCFF648YPL 296 bp overlap
ChIP K562 ENCFF648YPL 208 bp overlap
RBFOX2 3 datasets
ChIP HepG2 ENCFF939HTZ 278 bp overlap
ChIP K562 ENCFF196WTG 773 bp overlap
ChIP K562 ENCFF967GRF 773 bp overlap
RBM22 1 dataset
ChIP K-562 GSE120104.RBM22.K-562 100 bp overlap
SCRT2 2 datasets
ChIP HEK293 ENCFF711QQB 297 bp overlap
ChIP HEK293 ENCFF711QQB 131 bp overlap
SMAD1 1 dataset
ChIP K-562 ENCSR038DJJ.SMAD1.K-562 121 bp overlap
SMAD2-3 1 dataset
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 433 bp overlap
SMAD3 1 dataset
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 773 bp overlap
SMAD5 2 datasets
ChIP K-562 ENCSR000FCD.SMAD5.K-562 249 bp overlap
ChIP K562 ENCFF941FJJ 303 bp overlap
SMARCA4 3 datasets
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 60 bp overlap
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 304 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 444 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 773 bp overlap
SRF 2 datasets
ChIP K562 ENCFF766EOO 223 bp overlap
ChIP K562 ENCFF972RAQ 291 bp overlap
SRSF3 3 datasets
ChIP K-562 GSE120104.SRSF3.K-562 270 bp overlap
ChIP K-562 GSE120104.SRSF3.K-562 214 bp overlap
ChIP K-562 ENCSR268QIQ.SRSF3.K-562 202 bp overlap
SUPT5H 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 223 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 277 bp overlap
TAF7 1 dataset
ChIP K562 ENCFF314WLE 151 bp overlap
TARDBP 2 datasets
ChIP K-562 GSE120104.TARDBP.K-562 169 bp overlap
ChIP K-562 GSE120104.TARDBP.K-562 226 bp overlap
TEAD1 4 datasets
ChIP K-562 ENCSR591ASD.TEAD1.K-562 107 bp overlap
ChIP K562 ENCFF254RJL 299 bp overlap
ChIP K562 ENCFF254RJL 511 bp overlap
ChIP K562 ENCFF465AQA 297 bp overlap
THRB 1 dataset
ChIP K562 ENCFF620NFN 291 bp overlap
USF1 1 dataset
ChIP K562 ENCFF202SFC 425 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 82 bp overlap
ZBTB12 1 dataset
ChIP K562 ENCFF933CVM 331 bp overlap
ZBTB26 1 dataset
ChIP K562 ENCFF766TDN 291 bp overlap
ZBTB43 1 dataset
ChIP K562 ENCFF722QWH 350 bp overlap
ZBTB9 1 dataset
ChIP K562 ENCFF233EFX 397 bp overlap
ZFPM2 1 dataset
ChIP K562 ENCFF804JGZ 341 bp overlap
ZKSCAN8 1 dataset
ChIP K562 ENCFF387ETI 86 bp overlap
ZNF175 1 dataset
ChIP HEK293 GSE76494.ZNF175.HEK293 117 bp overlap
ZNF257 1 dataset
ChIP K562 ENCFF849YZP 261 bp overlap
ZNF3 2 datasets
ChIP K-562 ENCSR195QFV.ZNF3.K-562 338 bp overlap
ChIP K-562 ENCSR195QFV.ZNF3.K-562 145 bp overlap
ZNF354B 1 dataset
ChIP K562 ENCFF955JQT 153 bp overlap
ZNF398 1 dataset
ChIP K562 ENCFF664RQO 92 bp overlap
ZNF511 1 dataset
ChIP K562 ENCFF962ZYT 350 bp overlap
ZNF512 1 dataset
ChIP K562 ENCFF455WDH 300 bp overlap
ZNF550 2 datasets
ChIP Hep-G2 ENCSR198BHH.ZNF550.Hep-G2 196 bp overlap
ChIP Hep-G2 ENCSR198BHH.ZNF550.Hep-G2 269 bp overlap
ZNF583 1 dataset
ChIP K562 ENCFF879KXH 357 bp overlap
ZNF605 1 dataset
ChIP HepG2 ENCFF640NFJ 337 bp overlap
ZNF740 1 dataset
ChIP K562 ENCFF913GVQ 336 bp overlap
ZNF830 1 dataset
ChIP K562 ENCFF958IPC 357 bp overlap